Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2247 ATGGACAAAGCTCTCCACGTTGCCATTTCAAATTGGGCGGGCCACTCTGAGCTTCCCCTTCTTCAACAATGGAGTATCTGGGTTAGGTTGGTCGTTAATGGGGGTTTGGAATTTCTGATTATGACGGAGGAAGATTCGCGGTTCAACTGTTGCAAGAAAAAAAAACGGAGCCTGGTTGGTTTAGTTGGAAAAGGTCAATTTGCCATGATTCATTCTGGTTTCTTCCTTGCCGGACCGTCGTTTAATTCTGATGCTACTACGTCTTTCATATCAATTCCGGTGTCTGGAGAAGATGGCGCTACGGGGGATGATATCGGAAACGATACGTCTGATTCCGTCCCCCCTTCTTTTTGGGTTAGAACAGCGATGAAAATATCGAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCAGGTTCGTGGATGGCGATGGAATTTGTAGCTCTGTTGTTTCAGCTAATTATCTCAGCGTTTACTTTTGCCATTTCACGGGCTGAGAGTCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTATGGCCGCCGTCGGTATAATTATCTAATGCAGGGAGATGGTGACAGTCTTTCAGATATAGAACACGAACAGCAGAGGAGCGATGAATCATCAAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTTGATTCTCGCCTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTCTGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATCCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCTTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTAGACGATCAAATTTCCCAGCTACCTTGCTGGAAATACAAAGCAGTGGACGCCAACATCAACCCTGGAAGTCAACCCCACAATAGCAATACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACGGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCGCTTTTTGATCTTCAGTCTCCATCTCTGTTTTCGCCTTCCTCTCCTTTTCGTCCACCATTTCCGAAAGCTCCCCTTTTCCCTCCATTTCCTTCTATTTACACTTCCATGTCCCCTTTTCCCTCTTTCTTTCCCCTTTTCCCCATTGCCTTTGAGGCTCATTCAAGTTACCCCTTCAAAGTTAAAACCCAACTGCCTGATCCTCATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCCTGTAACTGTGGTGGCACTGCTTCCTTTATCTCGAATTCGTTGGTGGAAGAAGATGGTGCAGGTGCGGATGTTAGAGACGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCGGATCTCAGGTCTGATCCTTTCAATTCTATCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTAGGATGCATTCTTAGTTTGTTGCTTCTCTACGGGCGATATTGGCATCTTTATTTAATGCGTGGAGACCATGTCGGCCTTTCTGAGACCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGTTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCGTTCCAAAGAGCCCCCAAGCTTCATCTGCTATGTGTCTTCCTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCGTTTATTCTCTTTCTGCTGCTATGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCATCAACCGACAAAGGAGCATCGGATGATCAAATATCTGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGATAGTAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTACCTTGTTCCCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTTCAATCACATCTTCTTGCCCTCTCTGTAAGCAACAACTTCAAAAATAG 2457 44.4 MDKALHVAISNWAGHSELPLLQQWSIWVRLVVNGGLEFLIMTEEDSRFNCCKKKKRSLVGLVGKGQFAMIHSGFFLAGPSFNSDATTSFISIPVSGEDGATGDDIGNDTSDSVPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMEFVALLFQLIISAFTFAISRAESPVWPMRLWIGGYDLGCVLSLLLLYGRRRYNYLMQGDGDSLSDIEHEQQRSDESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSFIGYNINMGSTEKGALDDQISQLPCWKYKAVDANINPGSQPHNSNTGLPKEDPECCICLAKYIDKEEVRRLPCSHVFHLKCVDKWLAITSSCPLFDLQSPSLFSPSSPFRPPFPKAPLFPPFPSIYTSMSPFPSFFPLFPIAFEAHSSYPFKVKTQLPDPHKERSFSMINSGYFVSGPSCNCGGTASFISNSLVEEDGAGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLRSDPFNSISWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMRGDHVGLSETEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLSITSSCPLCKQQLQK 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39341623 39349158 + CePI673135_09g022470.1 Cec09g2247 212757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2247 818 ProSiteProfiles Zinc finger RING-type profile. 369 408 IPR001841 -
Cec09g2247 818 SMART ringv_2 771 813 IPR011016 GO:0008270(InterPro)
Cec09g2247 818 SUPERFAMILY RING/U-box 364 408 - -
Cec09g2247 818 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 526 817 - -
Cec09g2247 818 CDD RING-H2_RNF6-like 771 813 - -
Cec09g2247 818 Pfam Ring finger domain 368 408 IPR001841 -
Cec09g2247 818 Pfam Ring finger domain 771 813 IPR001841 -
Cec09g2247 818 SMART ring_2 772 812 IPR001841 -
Cec09g2247 818 SMART ring_2 369 409 IPR001841 -
Cec09g2247 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 818 IPR013083 -
Cec09g2247 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 412 IPR013083 -
Cec09g2247 818 SUPERFAMILY RING/U-box 767 816 - -
Cec09g2247 818 ProSiteProfiles Zinc finger RING-type profile. 772 813 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0652 Cec-Chr8:18270440 Cec09g2247 Cec-Chr9:39341623 9.50E-07 dispersed
Cec08g1327 Cec-Chr8:25207714 Cec09g2247 Cec-Chr9:39341623 8.00E-46 dispersed
Cec09g2247 Cec-Chr9:39341623 Cec10g1676 Cec-Chr10:31267463 5.30E-32 dispersed
Cec09g2247 Cec-Chr9:39341623 Cec07g1624 Cec-Chr7:31773142 8.90E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2247 - - - 0.0