Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2296 ATGGCGGCCAGGCCCAACTCCGTTTCCTTCAGGGTTCCGTACAAGAACCTCCATGATGCAGAAGTGGAGATGGTGGCTGTCGATGAACACCAGCTCCACGGGATCGATCTCAATTCTCCTTCTTCTGATGGATGTCCCAATGGAAGCCAAGACAGTTCATCCTCAACGCCTCATGTTAGATCTACGCCCAATAGTTTGATTATCTTAGTTCTCAGTTGTACTATCGCTGCCGGTGTTCAATTTGGTTGGGCATTACAGCTTTCCTTACTAACTCCCTATATTCAGACGCTCGGAATTGAGCATGCATTTTCTTCCTTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGTTCAACCATGTGTCGGTATATGGAGTGACAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCTTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATACTAGGAGATACAAAGGAGCACTGCAGATTATATAAGGGTACACGAACAAGGGCAGCTATTATCTTTGTAATAGGCTTTTGGATGCTTGACCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCGGTATTTTGTTCTTGGATGGCTGTTGGTAATATCCTTGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTCCTTTTAAGTAATGCTTGCTGTGAAGCCTGTGGGAACCTTAAAGCTGCATTTCTTATTGCTGTGCTTTTTCTAACCATATGTACTCTTGTTACCATATATTTTGCCGATGAAGTTCCACTTACTGCTGTAGATCAACCACCACGTTTATCAGATTCTGCGCCTCTGTTGAATGGGAATGAACAGAATAGTCCTAATATTTTAAAACCAGAACTTAACAGTCGGAATGGGAGCAGTGTTGACTATGGCTATCTAGAAAATATTAATTTGAAAAATTCAAAACCAATAAGTGAGGAAAATCACAGCGAAGGTTATTATGATGGTCCTGCAACAGTGGTAGTCAAATTGTTGACCAGTTTAAGACATTTACCGCCGGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGTTGGTTATCCTGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAAGGCAGTTTGACTGATGAACAGGTTTATGATCAGGGTGTGAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTTATAGAGCCCATGTGTCAGCGCATGGGAGCAAGACTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGACGGGAACTACTATTATCAGTTTAATATCTGTCAGTCAATACTCTGAAGGAATTGAACATATTATTGGGGGAAATTCAACAATAAAAAATGCTGCCTTGGCTGTTTTTGCTCTTCTTGGTTTTCCTCTCGCCATAACATATAGTGTCCCCTTCTCTTTGACAGCAGAATTGACTGCTGATTCTGGTGGTGGTCAAGGATTAGCAATAGGAGTTCTCAATCTTGCAGTTGTTATTCCCCAGATGATTGTATCCTTGGGAGCTGGGCCATGGGATGCTTTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTAGCCTCTATATGTGCGCTTGCGGCCGGAGTGGTCGCAGTTCTTAGATTGCCTAAGCAAACCAACAGTTCTTTCAAATCCACAGTGAAGGAAAAGATTCCTGGAGTTGCTCTTAGAAAGAAGGCTGAATTTCCAGTGCCCCACCAATACATCCGTGTACCTTATACCTTTATTTAA 1890 42.75 MAARPNSVSFRVPYKNLHDAEVEMVAVDEHQLHGIDLNSPSSDGCPNGSQDSSSSTPHVRSTPNSLIILVLSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRLYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSNACCEACGNLKAAFLIAVLFLTICTLVTIYFADEVPLTAVDQPPRLSDSAPLLNGNEQNSPNILKPELNSRNGSSVDYGYLENINLKNSKPISEENHSEGYYDGPATVVVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLTDEQVYDQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAMSNFIVFACMTGTTIISLISVSQYSEGIEHIIGGNSTIKNAALAVFALLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNIPAFALASICALAAGVVAVLRLPKQTNSSFKSTVKEKIPGVALRKKAEFPVPHQYIRVPYTFI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39818456 39824172 + CePI673135_09g022960.1 Cec09g2296 212806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2296 629 MobiDBLite consensus disorder prediction 300 322 - -
Cec09g2296 629 Gene3D MFS general substrate transporter like domains 62 589 IPR036259 -
Cec09g2296 629 FunFam Sucrose transport protein SUT5 376 596 - -
Cec09g2296 629 SUPERFAMILY MFS general substrate transporter 54 591 IPR036259 -
Cec09g2296 629 MobiDBLite consensus disorder prediction 301 322 - -
Cec09g2296 629 FunFam Sucrose transporter SUC2 67 291 - -
Cec09g2296 629 Pfam Major Facilitator Superfamily 76 477 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cec09g2296 629 CDD MFS_SLC45_SUC 69 586 - -
Cec09g2296 629 MobiDBLite consensus disorder prediction 38 59 - -
Cec09g2296 629 PANTHER SUGAR TRANSPORTER 65 586 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2296 K15378 - - csv:101205348 1126.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g2296 Cec-Chr9:39818456 Cec11g1097 Cec-Chr11:21653634 2.50E-114 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec11g1097 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec11g1104 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec08g1231 . 32 477 Sucrose Transporter Gene Family AT1G22710 51.3 5.7e-133 471.5
Cec11g1097 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec11g1104 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT2G14670 52.1 2.0e-130 463.0
Cec11g1097 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec11g1104 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec08g1231 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 4.2e-111 398.7
Cec09g2296 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 1.2e-182 636.3
Cec11g1097 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec11g1104 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.7 7.2e-125 444.5
Cec11g1097 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec11g1104 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.4 5.3e-128 454.9
Cec08g1231 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 8.1e-196 680.2
Cec11g1097 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1104 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1097 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec11g1104 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.4 3.3e-128 455.7
Cec11g1097 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1104 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1097 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec11g1104 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.4 3.3e-128 455.7
Cec11g1097 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec11g1104 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec08g1231 . 32 477 Sucrose Transporter Gene Family AT1G22710 51.3 5.7e-133 471.5
Cec09g2296 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 1.2e-182 636.3
Cec08g1231 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 8.1e-196 680.2
Cec11g1097 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1104 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1097 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1104 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1097 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec11g1104 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.4 5.3e-128 454.9
Cec11g1097 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec11g1104 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec08g1231 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 4.2e-111 398.7
Cec11g1097 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec11g1104 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT2G14670 52.1 2.0e-130 463.0
Cec11g1097 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec11g1104 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.7 7.2e-125 444.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41