Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2323 ATGACAGCCATTGCAGTTCACCAGTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGACCACTCCATGGTTGCATTTTGTCCAAACAATAATGAAGTTCACATTTATAAATCATCACAAGACAACTGGGAGAGAGTACATGTTCTTCAAAAGCATGATCAGCTTATCTCTGGGATAGACTGGAGTGTTAGGTCAAACAGAATTGTGACTGCATCTCATGATCGGAATTCGTATGTTTGGAACCTTGAACGATCGGAGTGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGGAGTGGGGCAAAAACTGTTTGCATCTGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAGCTTATCAGAAAAAGACATGATTCTTCTGTGACAAATGTTGCTTGGCATCCCAATAATCTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAGAGCTGGCGCATTTTCGGATTCAAAATTTGGAGAGTTAATTGTTCAGCTTGATCTCTCATTCTCTTGGGCATTTGGCGTAAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTCGTAGATGAAGTTGGTCCTTCTCCTCTAGCCCAGAATGTTGCATTCCGAGATTTACCTCTTCGTGATATACTATTTGTTTCTGAGAGAATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTGTAAGATTTCTTGGTGAGAGGAAAACAGCGTCAGGTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGCGTTGGAAATGATTCAGTTGAATCTTCAAGATTGCGTGGATGTGTCCACGAGAATTGTATAAGTTGTATTGTGCCTCTTAAAGAGCCAGGGGTTTCCACTATAAAGCGGTTCAGTACTTCAGGTTTGGATGGAAAAGTGAATCTTGCTCTTGGAACTTGGCACTTGGCACAGGCACAGTCACGTGCTTTGTATATTATAGCAGCTGCTTCTTCCTTCAGTTTTCTCTGTGCTCTGTACTCAGCGGCGAATATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTTTCTCGCTTCCCTCTCCATTTTCCCTCCAAACCATTCTTCTTTCACTCCAAACAAACTCAACTTTCATCTTCACATCCCATTCCCAATTCCACTCTCACAGACCAATTTCCCACTTCCATTTCTTCCCAATCCCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTCCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGAGTCCTATCTCAGTCGCCTCCGAGCTTTGGAGCCTCACCTCAAGTCATTTCTCTACGTCTCTGACACCGTCCTCTCTGATGCCCGTGAGATTGATGACAAAATTCACAGAAATGAGGTACTGGGTCCTTTGGCTGGGGTGCTTGTGGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTCGGATTCTTGATGGGTATCGGCCACCATTTGATGCTACGGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGTTCTACTGAAGGCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGAGTACCGGGAGGATCATCAGGAGGGTCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGCTTGAAACCAACCTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCACGATACACTTGATGCCACTAGTAGTAAACGAGAGGTTCCTGATTTCACATCGCAATTTTCTGCTGTTGATTCATTGGAGTCTAAACCCTTAAAAGGATTGAGGATTGGCCTAATTCGTGAAACCCTTGATAATGGCGTTGATGGTCAAGTAAATTCTGCTATCCGTGCTGCTGCTTCACATCTAGAAGAACTAGGATGTTCCATAAATGAGGTATCACTGCCATCATTCTCTCTTGGGTTGCCTGCATATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCTCGATATGATGGTATCAGATATGGAAATCAAGCTGTTGCTGATGAGTTAACTGGTCTTTATGAAAATTCCCGAGCAGCAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAGAGCAGCATTAGATGAAAATGACATCTTAATATCACCTGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGACGATCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCATTGGTTTTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGTAAACTTCTTAAAGTGGGACACGTCTTTGAGCAAACTCTTGCAGACTGCAGATTTGTTCCACCCGTCCTAGCCGATGACATTAGTCTACAAGATCGCTGTCCCTTTGGAATCTCGGTCAATTCATTGTTCCGATCTATTCCATCTGTTCACCGACGGATCTCCGGTCGTTCTGTACTTCTCCGACAGCAGATATTGAAAAAGATGTCGGGCCAAAGCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAAAAGAAGAGTGATGCTTTGACCGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCACAGCTAAGGAATCAATGGGGGATGTCATGAAGACATCTGCATTTTCTCTTACCGAAGCAAAATATGTTGCTGGTGACAATATCAAGCATATTGTCCTTGAGAATGTCCAAAGTGCAGCTATCAAGATTCGATCTCGGCAGGAAAATATTGCTGGTGTAAAGCTCCCAAAATTTGAACATTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAAATCCAGCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCCTCACTCCAGACTTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAACGCTCTAGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATTCAGGGTTATAAGAGAAGGGAAATTGAGAAACAACGTGCCAATGCTAAGCTATTTGCTGAGGAACAACTTGCAGAGAAGATATCTTTGCAAAAGGGTGTCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGATGCGGATATTATTTTCTGA 3759 43.95 MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSSQDNWERVHVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLERSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSRAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQNVAFRDLPLRDILFVSERMVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSKYGSQFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCISCIVPLKEPGVSTIKRFSTSGLDGKVNLALGTWHLAQAQSRALYIIAAASSFSFLCALYSAANMLSTLQPPRCSLSRFPLHFPSKPFFFHSKQTQLSSSHPIPNSTLTDQFPTSISSQSLHSQILSIRHSLLSRQITATQLAESYLSRLRALEPHLKSFLYVSDTVLSDAREIDDKIHRNEVLGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVKRIKELGGIVVGKTNLDEFGMGSSTEGSAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVPDFTSQFSAVDSLESKPLKGLRIGLIRETLDNGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGIRYGNQAVADELTGLYENSRAAGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHVFEQTLADCRFVPPVLADDISLQDRCPFGISVNSLFRSIPSVHRRISGRSVLLRQQILKKMSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAEKISLQKGVSISSAHNLLSAAAEKDADIIF 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40122057 40138515 + CePI673135_09g023230.1 Cec09g2323 212833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2323 1252 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 463 938 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Cec09g2323 1252 FunFam Actin-related protein 2/3 complex subunit 4 376 - -
Cec09g2323 1252 Gene3D - 4 381 IPR015943 GO:0005515(InterPro)
Cec09g2323 1252 SUPERFAMILY WD40 repeat-like 11 268 IPR036322 GO:0005515(InterPro)
Cec09g2323 1252 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515(InterPro)
Cec09g2323 1252 ProSitePatterns Trp-Asp (WD) repeats signature. 69 83 IPR019775 -
Cec09g2323 1252 Pfam Amidase 477 927 IPR023631 -
Cec09g2323 1252 Pfam ATP synthase subunit D 1008 1199 IPR002699 GO:0046961(InterPro)
Cec09g2323 1252 ProSitePatterns Amidases signature. 603 634 IPR020556 -
Cec09g2323 1252 NCBIfam Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA 465 937 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Cec09g2323 1252 SUPERFAMILY Amidase signature (AS) enzymes 459 944 IPR036928 -
Cec09g2323 1252 Gene3D - 991 1189 - -
Cec09g2323 1252 Pfam WD domain, G-beta repeat 45 82 IPR001680 GO:0005515(InterPro)
Cec09g2323 1252 Pfam WD domain, G-beta repeat 141 171 IPR001680 GO:0005515(InterPro)
Cec09g2323 1252 NCBIfam V-type ATP synthase subunit D 1000 1202 IPR002699 GO:0046961(InterPro)
Cec09g2323 1252 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 172 IPR001680 GO:0005515(InterPro)
Cec09g2323 1252 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 87 - -
Cec09g2323 1252 PANTHER TRANSAMIDASE 444 936 IPR000120 GO:0003824(InterPro)
Cec09g2323 1252 FunFam V-type proton ATPase subunit D 992 1189 - -
Cec09g2323 1252 Gene3D Amidase signature (AS) domain 456 940 IPR036928 -
Cec09g2323 1252 SMART WD40_4 87 126 IPR001680 GO:0005515(InterPro)
Cec09g2323 1252 SMART WD40_4 2 38 IPR001680 GO:0005515(InterPro)
Cec09g2323 1252 SMART WD40_4 132 172 IPR001680 GO:0005515(InterPro)
Cec09g2323 1252 SMART WD40_4 43 82 IPR001680 GO:0005515(InterPro)
Cec09g2323 1252 SMART WD40_4 193 232 IPR001680 GO:0005515(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2323 K02433 - csv:101212627 986.867