Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2349 ATGTCGAAATCAAAGAAGGCTTCGACGACCACCCCAAATTCTTCAGTGTCGTCGTCGTCTAATGAAGCTGTAGTTGAAGAAGATTCAGTCAAGAGCAACAAAGAGGACATAAAAGGGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAACATAACAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGTTATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCCAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTAGTGATTACTACATATGAAGGCCAACACAACCACCATTGTCCAGCTACACTCCGAGGCCATTCTGCAGGGATCATGTCGTCTCCGTTCTATGCATCAGCATCAACATCGGTAACGGCAGCCTCGTCGGGGCCTACGCTTCCACAAGAACTTTTCTCACATTTGTTACCGACAAATAACTGCCAAACCGACCCGGCCTCGATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 657 42.31 MSKSKKASTTTPNSSVSSSSNEAVVEEDSVKSNKEDIKGCENKDEEKSKKQNNITKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASTSVTAASSGPTLPQELFSHLLPTNNCQTDPASMMYQNLSLQQHLQMPDHYGLLQDLFTQK 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40316282 40317866 + CePI673135_09g023490.1 Cec09g2349 212859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2349 218 MobiDBLite consensus disorder prediction 1 26 - -
Cec09g2349 218 Coils Coil 40 60 - -
Cec09g2349 218 SUPERFAMILY WRKY DNA-binding domain 71 138 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g2349 218 MobiDBLite consensus disorder prediction 1 65 - -
Cec09g2349 218 ProSiteProfiles WRKY domain profile. 73 138 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g2349 218 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 146 IPR044810 GO:0003700(InterPro)
Cec09g2349 218 Pfam WRKY DNA -binding domain 79 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g2349 218 SMART WRKY_cls 78 137 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g2349 218 Gene3D WRKY domain 63 139 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g2349 218 MobiDBLite consensus disorder prediction 27 65 - -
Cec09g2349 218 FunFam WRKY transcription factor 57 64 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2139 Cec-Chr4:39244737 Cec09g2349 Cec-Chr9:40316282 2.60E-41 dispersed
Cec06g0447 Cec-Chr6:5039065 Cec09g2349 Cec-Chr9:40316282 3.50E-35 dispersed
Cec08g1058 Cec-Chr8:22466291 Cec09g2349 Cec-Chr9:40316282 8.30E-36 dispersed
Cec09g0495 Cec-Chr9:4236269 Cec09g2349 Cec-Chr9:40316282 9.10E-32 dispersed
Cec09g2349 Cec-Chr9:40316282 Cec10g1167 Cec-Chr10:25499238 5.80E-34 dispersed
Cec10g1159 Cec-Chr10:25359492 Cec09g2349 Cec-Chr9:40316282 8.50E-14 dispersed
Cec02g1926 Cec-Chr2:37122354 Cec09g2349 Cec-Chr9:40316282 8.60E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30294 PF03106 WRKY 3.30E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2349 - - - 0.0