Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2359 ATGGCCGCGTCAGAGATGATGATGAAAAAGGGTGGTAGTGGACCACCGCCTTGCGCTGCTTGCAAGCTTCTGCGCCGGCGGTGTGCTCCGGACTGCGTTTTTGCTCCCTATTTCCCTTCCGATCAGCCTCACAAATTCTCAAGTGTTCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCATCAAAGGAGCGATGCTGTGAGTTCATTGGTATACGAGGCAAATGCAAGGATTCGAGATCCGGTATACGGATGCGTGGGAACGATATCGTGTCTACAACAGGAAGTAGATACGTTGCAACAACAACTAGCAATGACACAGGCCCAGCTAGTTCAATTGAAAATGGGCCAATTTGCATCAACATCACAAGCATCATCTAGTAGGGATGACCTCCTTCCTCCTCCGCCCAATATCAATGTGGGCGCATCACCATCCTTGTGGTCTTGCTAG 471 49.89 MAASEMMMKKGGSGPPPCAACKLLRRRCAPDCVFAPYFPSDQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSLVYEANARIRDPVYGCVGTISCLQQEVDTLQQQLAMTQAQLVQLKMGQFASTSQASSSRDDLLPPPPNINVGASPSLWSC 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40416421 40418653 + CePI673135_09g023590.1 Cec09g2359 212869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2359 156 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cec09g2359 156 Coils Coil 96 116 - -
Cec09g2359 156 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Cec09g2359 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 126 - -
Cec09g2359 156 MobiDBLite consensus disorder prediction 131 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2031 Cec-Chr2:38077549 Cec09g2359 Cec-Chr9:40416421 1.40E-37 dispersed
Cec07g0514 Cec-Chr7:5931469 Cec09g2359 Cec-Chr9:40416421 4.50E-39 dispersed
Cec09g2359 Cec-Chr9:40416421 Cec10g1403 Cec-Chr10:28374804 2.90E-35 dispersed
Cec02g1940 Cec-Chr2:37289655 Cec09g2359 Cec-Chr9:40416421 6.80E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30296 PF03195 LOB 7.20E-44 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2359 - - - 0.0