Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2389 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAATAATAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCCCCGCCATCTACGCCAAACTACGGTGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGCCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGACACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1146 49.04 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNNASIKLQRPSPRRTPLSMDRANHPLTTAPQSTHSPFG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40654358 40656400 + CePI673135_09g023890.1 Cec09g2389 212899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2389 381 MobiDBLite consensus disorder prediction 364 381 - -
Cec09g2389 381 Gene3D - 31 89 - -
Cec09g2389 381 MobiDBLite consensus disorder prediction 314 332 - -
Cec09g2389 381 MobiDBLite consensus disorder prediction 333 354 - -
Cec09g2389 381 FunFam Myb family transcription factor 31 89 - -
Cec09g2389 381 MobiDBLite consensus disorder prediction 314 381 - -
Cec09g2389 381 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cec09g2389 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 189 IPR046955 GO:0003700(InterPro)
Cec09g2389 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Cec09g2389 381 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cec09g2389 381 Pfam MYB-CC type transfactor, LHEQLE motif 127 167 IPR025756 -
Cec09g2389 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0383 Cec-Chr5:3124482 Cec09g2389 Cec-Chr9:40654358 3.00E-39 dispersed
Cec07g0267 Cec-Chr7:2622870 Cec09g2389 Cec-Chr9:40654358 7.20E-31 dispersed
Cec09g2389 Cec-Chr9:40654358 Cec10g1341 Cec-Chr10:27656736 7.70E-34 dispersed
Cec02g1969 Cec-Chr2:37533770 Cec09g2389 Cec-Chr9:40654358 8.30E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30298 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2389 - - - 0.0