Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2389 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAATAATAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCCCCGCCATCTACGCCAAACTACGGTGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGCCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGACACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1146 49.04 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNNASIKLQRPSPRRTPLSMDRANHPLTTAPQSTHSPFG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40654358 40656400 + CePI673135_09g023890.1 Cec09g2389 212899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2389 381 MobiDBLite consensus disorder prediction 364 381 - -
Cec09g2389 381 Gene3D - 31 89 - -
Cec09g2389 381 MobiDBLite consensus disorder prediction 314 332 - -
Cec09g2389 381 MobiDBLite consensus disorder prediction 333 354 - -
Cec09g2389 381 FunFam Myb family transcription factor 31 89 - -
Cec09g2389 381 MobiDBLite consensus disorder prediction 314 381 - -
Cec09g2389 381 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cec09g2389 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 189 IPR046955 GO:0003700(InterPro)
Cec09g2389 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Cec09g2389 381 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cec09g2389 381 Pfam MYB-CC type transfactor, LHEQLE motif 127 167 IPR025756 -
Cec09g2389 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2389 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0383 Cec-Chr5:3124482 Cec09g2389 Cec-Chr9:40654358 3.00E-39 dispersed
Cec07g0267 Cec-Chr7:2622870 Cec09g2389 Cec-Chr9:40654358 7.20E-31 dispersed
Cec09g2389 Cec-Chr9:40654358 Cec10g1341 Cec-Chr10:27656736 7.70E-34 dispersed
Cec02g1969 Cec-Chr2:37533770 Cec09g2389 Cec-Chr9:40654358 8.30E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec05g1231 . 247 447 G2-like Transcription Factor Family AT5G16560 57.3 1.3e-44 177.6
Cec09g1158 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cec05g2157 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cec08g1594 . 54 140 G2-like Transcription Factor Family AT5G42630 85.1 2.6e-37 152.5
Cec05g2524 . 19 256 G2-like Transcription Factor Family AT1G25550 56.5 9.3e-53 204.1
Cec08g0536 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 6.0e-52 201.4
Cec03g0127 . 1 269 G2-like Transcription Factor Family AT3G46640 51.9 2.6e-62 236.1
Cec10g1667 . 5 185 G2-like Transcription Factor Family AT3G46640 50.4 4.9e-37 152.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 3.1e-74 275.4
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT5G05090 53.6 8.9e-69 257.3
Cec05g0383 . 12 314 G2-like Transcription Factor Family AT4G13640 57.7 8.6e-65 244.2
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec09g2389 . 1 381 G2-like Transcription Factor Family AT1G79430 55.1 1.7e-86 316.6
Cec02g1969 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cec05g0383 . 38 202 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cec04g1814 . 102 319 G2-like Transcription Factor Family AT2G01060 65.3 2.1e-53 206.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT3G10760 63.3 9.4e-92 334.0
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.7e-83 305.8
Cec04g0650 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30298 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Cec TF