Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0006 ATGCTTTCGGCTACTTCTCCACCGGATCTTGTGAAGATAGAGTGTTTGACTGTACCCTCCTCCCAATTCTCTAACTCAATCCTCTCCACCATCGATGTTGTACAACAGGTTATCGCCATTTTCTCTCCATTCACTAAATTACTCGGTGATTTACGCCTTTCCACCGCCGTTTCCGACTGTCTCGATTTGCTTGACTCTTCTGCTGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAATATCCCAAGGCTAAAGACCACAGCACCGGAGATTTGAGTTCCGATCTGAAGACATGGCTGAGTGCTGCAGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTATCAAAGGTCTAGTATCTGGAAGCATCAACCAGTTGACTTCACAGCTCTACGACCTTCTTTCCATGGTCAAATCAATCCCCAATCAGCCGGCGGCTGACTTTCCTTCCTGGGTGAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTCGCCGCCGATGCCACTGTGGCCGCCGATGGGACGGGGGATTTCACCAGTGTGATGGATGCTGTATTAGCAGCCCCTGACAATAGCATACAACGTTATGTTATATACATAAAGAGGGGTGTGTATTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAATCTAATGATGATTGGAGATGGAATTGATGCCACCATCATATCGGGTAATCGGAGTTTTATTGACGGTTGGACAACATTCCGTTCAGCGACATTTGCTGTAAGTGGAAGAGGATTCATAGCTCGAGACATAACATTCGAGAATACTGCAGGGCCACAGAAACATCAAGCAGTAGCACTTAGATCAGACTCGGATCTGTCGGTATTTTTTAGATGCCGTATTAGAGGATATCAAGACACTCTGTACACGCACACCATGCGCCAATTCTACCGCGAGTGCCAAATCAGTGGCACCGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAATTGTAGCATCCTCGCGAAGAAAGGTCTTCCCAATCAGAAAAACACTATCACTGCTCAAGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGATCTTAAACCTTCGGTTAACACCACAGCTACATACCTTGGAAGACCATGGAAAGAATATTCTAGAACCATTATCATGCAGTCATATATGAGCGACGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGCCGATTTTGCATTGAAGACACTATTCTACGCCGAGTTTATGAATTATGGACCAGGGGCGGGATTGGCGAAGCGTGTCAATTGGCCTGGTTACCGCCGGCTGAACCAAACTAGTGAAGCTTCTAACTTCACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACCGGTGTCAAATACACTGCAGGATTGGGAGCTAATTAA 1464 47.27 MLSATSPPDLVKIECLTVPSSQFSNSILSTIDVVQQVIAIFSPFTKLLGDLRLSTAVSDCLDLLDSSADQLSWSLSATQYPKAKDHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGSINQLTSQLYDLLSMVKSIPNQPAADFPSWVKSEDRNLLQLNDFAADATVAADGTGDFTSVMDAVLAAPDNSIQRYVIYIKRGVYFENVEIKKKKWNLMMIGDGIDATIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPSVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNADFALKTLFYAEFMNYGPGAGLAKRVNWPGYRRLNQTSEASNFTVAQFIEGNLWLPSTGVKYTAGLGAN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 119820 122200 + CePI673135_10g000060.1 Cec10g0006 212921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0006 487 SMART PMEI_2 6 145 IPR006501 GO:0004857(InterPro)
Cec10g0006 487 SUPERFAMILY Pectin lyase-like 171 483 IPR011050 -
Cec10g0006 487 Pfam Pectinesterase 173 470 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec10g0006 487 PANTHER PECTINESTERASE 29 475 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec10g0006 487 FunFam Pectinesterase 167 484 - -
Cec10g0006 487 Pfam Plant invertase/pectin methylesterase inhibitor 45 140 IPR006501 GO:0004857(InterPro)
Cec10g0006 487 Gene3D - 167 484 IPR012334 -
Cec10g0006 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 17 148 IPR035513 -
Cec10g0006 487 CDD PMEI-like_4 1 146 - -
Cec10g0006 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 144 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1798 Cec-Chr3:36204177 Cec10g0006 Cec-Chr10:119820 1.30E-132 dispersed
Cec07g1549 Cec-Chr7:31032126 Cec10g0006 Cec-Chr10:119820 5.00E-109 dispersed
Cec09g0544 Cec-Chr9:4669231 Cec10g0006 Cec-Chr10:119820 1.90E-105 dispersed
Cec09g0545 Cec-Chr9:4700357 Cec10g0006 Cec-Chr10:119820 1.80E-127 dispersed
Cec09g0860 Cec-Chr9:8088371 Cec10g0006 Cec-Chr10:119820 1.30E-92 dispersed
Cec10g0006 Cec-Chr10:119820 Cec11g0021 Cec-Chr11:306833 5.50E-101 dispersed
Cec10g0006 Cec-Chr10:119820 Cec01g0041 Cec-Chr1:335094 7.40E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0006 K01051 - csv:101207185 894.034