Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0013 ATGACTCGCTATATCAGAGCTCTCGCCGCGAATACTTCGTCGGCGCCGCCGCCGGAGGCGGTGGCTTTGGAGTCGGACTTCGTGGTGATTCTGGCAGCGCTGCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGCCGTGGGGGTGGAAGTGTTGGAAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATCCTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGACCGGGGGAGAGGGGAAAATTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCACAGTGCAGGCATTGCTTCCACGTCAGCTGTGTAGACACGTGGCTGGGGTCCCACTCCTCATGTCCTTCTTGCCGTCAGATTCTGGTAGTGGCGAGATGCCAGAAGTGCGGGCAGTTTCCGGCCGTCGTGCAAGGCGGCGCTGCTCACAACAACGAAGAAGAGGAGGAAGTGGAAGATAACAACAGGGGTTTGGGATTTTTGCCTTGA 546 58.61 MTRYIRALAANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGSVGNQASANRGLKKKILQSLPKFRYKSTGGEGKIAAECAICLAEFMEGEEIRQLPQCRHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVQGGAAHNNEEEEEVEDNNRGLGFLP 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 212788 213333 - CePI673135_10g000130.1 Cec10g0013 212928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0013 181 CDD RING-H2_EL5-like 95 138 - -
Cec10g0013 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 142 IPR013083 -
Cec10g0013 181 SUPERFAMILY RING/U-box 76 144 - -
Cec10g0013 181 MobiDBLite consensus disorder prediction 160 181 - -
Cec10g0013 181 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Cec10g0013 181 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 168 IPR052788 -
Cec10g0013 181 FunFam E3 ubiquitin-protein ligase ATL6 59 144 - -
Cec10g0013 181 Pfam Ring finger domain 95 138 IPR001841 -
Cec10g0013 181 SMART ring_2 96 137 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0498 Cec-Chr7:5619873 Cec10g0013 Cec-Chr10:212788 3.70E-06 dispersed
Cec10g0013 Cec-Chr10:212788 Cec11g1933 Cec-Chr11:33481667 6.10E-29 dispersed
Cec10g0013 Cec-Chr10:212788 Cec02g0073 Cec-Chr2:693053 1.60E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0013 - - - 0.0