Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0030 ATGAAAAAACACCCTCCTCCTTCACTGTCAAAAGCTGCAGAGTTTCCGACATCTTCTTTTTATCTCCGCCGTGATGTCCACCGCCGACCGCCGGTGAGACAGTGCCAGAGGAAACTCAGACACATCAGCTCTCCTCCACCGCAAAATCCTTACCACCATCAGAACCCTCCTCTTGGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCCCCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACAAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGGCAGGAAAGATTGAAACGCCAGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACTGAACGACCATGA 954 47.69 MKKHPPPSLSKAAEFPTSSFYLRRDVHRRPPVRQCQRKLRHISSPPPQNPYHHQNPPLGDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEQLAGKIETPENYSLYQQAEGYSMTERP 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 388644 392829 + CePI673135_10g000300.1 Cec10g0030 212945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0030 317 PANTHER WUSCHEL-RELATED HOMEOBOX 13 68 314 IPR044559 GO:0003700(InterPro)
Cec10g0030 317 MobiDBLite consensus disorder prediction 36 65 - -
Cec10g0030 317 Pfam Homeodomain 138 198 IPR001356 GO:0003677(InterPro)
Cec10g0030 317 Gene3D - 140 204 - -
Cec10g0030 317 SUPERFAMILY Homeodomain-like 134 202 IPR009057 -
Cec10g0030 317 MobiDBLite consensus disorder prediction 213 228 - -
Cec10g0030 317 CDD homeodomain 138 200 IPR001356 GO:0003677(InterPro)
Cec10g0030 317 SMART HOX_1 136 203 IPR001356 GO:0003677(InterPro)
Cec10g0030 317 MobiDBLite consensus disorder prediction 196 239 - -
Cec10g0030 317 ProSiteProfiles 'Homeobox' domain profile. 134 199 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0030 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0030 Cec-Chr10:388644 Cec11g1922 Cec-Chr11:33420753 1.10E-73 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g1608 . 1 195 Wox Gene Family AT3G18010 56.7 1.1e-47 187.6
Cec06g1636 . 1 176 Wox Gene Family AT3G18010 53.1 3.0e-40 162.9
Cec10g0030 . 72 314 Wox Gene Family AT4G35550 54.2 8.1e-70 260.8
Cec11g1922 . 1 271 Wox Gene Family AT4G35550 50.2 3.5e-57 218.8
Cec08g1665 . 5 162 Wox Gene Family AT1G46480 65.1 2.4e-52 202.2
Cec01g1608 . 1 195 Wox Gene Family AT3G18010 56.7 1.1e-47 187.6
Cec06g1636 . 1 176 Wox Gene Family AT3G18010 53.1 3.0e-40 162.9
Cec08g1665 . 5 162 Wox Gene Family AT1G46480 65.1 2.4e-52 202.2
Cec10g0030 . 72 314 Wox Gene Family AT4G35550 54.2 8.1e-70 260.8
Cec11g1922 . 1 271 Wox Gene Family AT4G35550 50.2 3.5e-57 218.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30307 PF00046 Homeodomain 1.10E-18 CL0123 Cec TF