Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0048 ATGGATTTCATAGCCAACCCATTTCGCTTTTCTTCATCTTCATCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTCTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGCTGTCTCCTTTATCTGATTGATGTCATTGCTAGCCTCCTCAGTGGACGTCTAGTTCGAGAACGCATCGGTCCGGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTTCAGAGACAAGCTTTGATGACATTCCGAACATCTTTGACACCAGCAGTGCGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCCTATGGTGAGAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTCTATGCAGAAGGGATCTGTAA 708 45.34 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNIFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGASETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 543977 545315 + CePI673135_10g000480.1 Cec10g0048 212963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0048 235 SUPERFAMILY RING/U-box 176 235 - -
Cec10g0048 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Cec10g0048 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Cec10g0048 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Cec10g0048 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Cec10g0048 235 CDD RING-H2_NIPL1-like 189 232 - -
Cec10g0048 235 SMART ring_2 190 231 IPR001841 -
Cec10g0048 235 Pfam Ring finger domain 190 232 IPR001841 -
Cec10g0048 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0048 Cec-Chr10:543977 Cec11g1310 Cec-Chr11:27163284 3.00E-12 dispersed
Cec10g0048 Cec-Chr10:543977 Cec09g2102 Cec-Chr9:37965350 1.20E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0048 - - - 0.0