Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0049 ATGCTATCAAGCTTGATGAACTTCCTGAGGGCTTGCTGGCAGCCATGTGCCGATCATCTCTTGCGTCGTCGGGGCGGTGGTTCCGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCATCACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGTCAGCTTGAGTCTGGTCCCTTGAGCTTACTCGAGTCTGGACCCTATGGAACCTTTATAGGAATATACGATGGCCATGGCGGCCCTGAGACATCACGATTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTCGCCACAGAAGAAAAGGAAATGTCAGTTAATGTGATAAAAAAAGCATTCCAAGCAACAGAAGATGGGTTTCTCTCTCTTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGCTGTGATTTGTAATGGAAAACTCTACATTGCCAATCTTGGTGATTCCCGAGCTGTGTTGGGAAGGTTAGTTCGGTCCACGGGGGAAGTTCTTCCCATTCAGCTGTCATCGGAGCATAATGTAAGCATAGAGTCAGTCCGCCAGGAGATGCAGTCTTTGCACCCAGATGACTCCCGCATAGTAGTGCTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGTAGGCCTATTTTGAGCTCAGAACCAGCAGTCTCTGTGCACGAACTAGATCCAAATGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCACTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCTGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCGGATTTGAAGAAGATTGACCGTGGAGTTCGGCGCCATTTTCACGACGACACAACGGTGATAGTCGTGTTTCTTGGATCGAGCAGAGGGAGCAGCCCTGCTACAGCAGGGGGAGGGAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAATGAACCTATCTGCAAAATCTCTAGCACCTTGA 1179 48.35 MLSSLMNFLRACWQPCADHLLRRRGGGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFIGIYDGHGGPETSRFICDNLFQHLKVFATEEKEMSVNVIKKAFQATEDGFLSLVTKQWPMNPQIAAVGSCCLVAVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIESVRQEMQSLHPDDSRIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAVSVHELDPNDQFLIFASDGLWEHLSNQDALDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSRGSSPATAGGGSPVLSVRGGGMNLSAKSLAP 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 548057 550676 - CePI673135_10g000490.1 Cec10g0049 212964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0049 392 FunFam Phosphatase 2C family protein 39 368 - -
Cec10g0049 392 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Cec10g0049 392 PANTHER PROTEIN PHOSPHATASE 43 357 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec10g0049 392 Gene3D - 40 363 IPR036457 -
Cec10g0049 392 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169(InterPro)
Cec10g0049 392 Pfam Protein phosphatase 2C 83 327 IPR001932 -
Cec10g0049 392 CDD PP2Cc 82 358 IPR001932 -
Cec10g0049 392 SMART PP2C_4 42 356 IPR001932 -
Cec10g0049 392 SUPERFAMILY PP2C-like 62 359 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0415 Cec-Chr2:3930559 Cec10g0049 Cec-Chr10:548057 1.40E-160 dispersed
Cec02g1446 Cec-Chr2:31801103 Cec10g0049 Cec-Chr10:548057 3.20E-140 dispersed
Cec06g0452 Cec-Chr6:5109794 Cec10g0049 Cec-Chr10:548057 6.10E-116 dispersed
Cec10g0049 Cec-Chr10:548057 Cec10g2077 Cec-Chr10:35483190 3.50E-138 dispersed
Cec10g0049 Cec-Chr10:548057 Cec04g1767 Cec-Chr4:36615021 6.10E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0049 K01102 - csv:101220137 730.324