Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0064 ATGGCAGAAGAGGATACCCCATCTGAAAGTTCTGAACCTTCTTCTTATTCTTCAGCTCTCACCTCTTCAATGTCCACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTTTGAGAAGAAACACAGCCCCTCGTAGCAGAAGAATCTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGTCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACGATACTCACATGGCATTTCACGAAGAGCTACACAGCACAGTCTCTAGACAGCTTAGCGTATGGTCTTCGTCATGAACTGCTGCAGCGCCCGATTTTACGTATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGGTTTGTCCAGGCATTTCATCGAGATCATAGAAGCAACAATACATTTTATATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCATATAATATCAATCGGCTTTCTTCGGGTGAAGGGTGGTCGGAGCCACCCATACATGGCAATGTTTCTGCAAAATGGTTCCGGGAACCGCTTGATCCTATTAGCGGTGAGAAGATCGGGAAAGCAAGGCAAATCCCACCTGAGGACTTGATTAATATTGCTGGCATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCAGCTCTACCTGTTTCCGATGCTTCAAATGAAAGCATCGTTGCAGTGGTGGGTGTTACGACCGCCCTTTATAGCGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGCGGTCCAAAGCTTATGATGGCTGCCGATTCCCAGGATGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAATACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATAAGCAATATTACATCGACTCATTTTTCCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCATACAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACACCAATGGCTGCAGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTTCGACAGTAACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATACTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACAACATGCCAAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAACTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAAAGAAACGGGAAAGTTCTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACGCATGGTGGCACGGGTCTTGGACTATGCATTGTACGTACCTTGGTTAACAAGATGGGGGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACACCTGCAGACTCCACAGATCATCACTGTCAGTTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACATCACAGTGGCTTCGTAAAATCGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAAAAGTTCTGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATTGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCTTGGATGTTAAACCATGATACATCCAACGCCATAAAGATGGAGCTCCGGGGAAAAGGGTACATTATAATGAACAATAAGCCACTGTACAGATCAAAGATGATTCATATTTTGGAATCTGTTATGAAGGACAGAAATCTTGAGTTGCAAAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGAAATCCTAACTCTCAGTGTGCGACATTTGAAGTCAGAGACAGCCAAGAAGAAATGACACCGAAACCATGTCAGTCACCATTTCTGCCCATTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCCATTGAGAGTAATGTGAGGACGGGCGATCAGTGTGACACGAGACAAAATTCATCAATGCCTCAATGTCAAAGTTCTGAGTCCAATGGACAGAACTTAGGATGCAACTGTCCTAAAAGCCAAGGAGAATCACATTCTAAGAACGTTCAAGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGAATGGGAGCCACGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGGTCAGTGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGCAGGAACGAGCCTTCACGTTCCAATTGTAGCATTGACAGCCCACGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCCTACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACGCAGAGAAGAGTGTAA 3672 42.29 MAEEDTPSESSEPSSYSSALTSSMSTPLRKVFCRISGLATSLRRNTAPRSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYNINRLSSGEGWSEPPIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAADSQDDVIRLGAEWLQNTYGNNFPPGHEVHEENVKLGDKQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDNMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKETGKFCMDQKKSRFPNRTKMKQQGDHTKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPADSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKIGLFTLEASEWNELTLILQELFQAKSSENKKGFSPQDSLGETLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGYIIMNNKPLYRSKMIHILESVMKDRNLELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNPNSQCATFEVRDSQEEMTPKPCQSPFLPINNSLVELTHVHSIESNVRTGDQCDTRQNSSMPQCQSSESNGQNLGCNCPKSQGESHSKNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIAFGDGLQAVEALTAMVSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEAGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRV 1223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 664815 670372 - CePI673135_10g000640.1 Cec10g0064 212979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0064 1223 Gene3D - 494 573 - -
Cec10g0064 1223 Pfam Response regulator receiver domain 1090 1214 IPR001789 GO:0000160(InterPro)
Cec10g0064 1223 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 768 IPR036890 -
Cec10g0064 1223 MobiDBLite consensus disorder prediction 1037 1078 - -
Cec10g0064 1223 SUPERFAMILY CheY-like 1086 1221 IPR011006 -
Cec10g0064 1223 FunFam Histidine kinase 1-like protein 494 573 - -
Cec10g0064 1223 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec10g0064 1223 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec10g0064 1223 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec10g0064 1223 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 768 IPR003594 -
Cec10g0064 1223 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec10g0064 1223 SMART HisKA_10 506 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec10g0064 1223 Gene3D - 574 773 IPR036890 -
Cec10g0064 1223 ProSiteProfiles Response regulatory domain profile. 1089 1219 IPR001789 GO:0000160(InterPro)
Cec10g0064 1223 SMART HKATPase_4 619 771 IPR003594 -
Cec10g0064 1223 Gene3D - 1068 1221 - -
Cec10g0064 1223 PANTHER TWO-COMPONENT HISTIDINE KINASE 49 777 IPR050736 -
Cec10g0064 1223 SMART REC_2 1088 1215 IPR001789 GO:0000160(InterPro)
Cec10g0064 1223 MobiDBLite consensus disorder prediction 1 22 - -
Cec10g0064 1223 MobiDBLite consensus disorder prediction 1037 1079 - -
Cec10g0064 1223 MobiDBLite consensus disorder prediction 7 22 - -
Cec10g0064 1223 CDD HisKA 507 568 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec10g0064 1223 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec10g0064 1223 CDD REC_hyHK_CKI1_RcsC-like 1090 1215 - -
Cec10g0064 1223 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0064 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0285 Cec-Chr2:2629811 Cec10g0064 Cec-Chr10:664815 1.40E-40 dispersed
Cec02g1577 Cec-Chr2:33357165 Cec10g0064 Cec-Chr10:664815 4.00E-67 dispersed
Cec10g0064 Cec-Chr10:664815 Cec11g0114 Cec-Chr11:1363374 1.90E-41 dispersed
Cec10g0064 Cec-Chr10:664815 Cec02g0970 Cec-Chr2:13922414 2.00E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0064 . 28 1220 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1450.3
Cec11g0114 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cec01g0676 . 151 1098 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1300.8
Cec02g0285 . 289 1237 Histidine Kinase Gene Family AT2G01830 53.8 7.4e-276 947.2
Cec06g0223 . 100 1026 Histidine Kinase Gene Family AT2G01830 53.8 2.5e-268 922.2
Cec02g0970 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 1.5e-265 912.9
Cec05g1770 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 1.1e-291 999.6
Cec08g0938 . 126 1245 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1833.2
Cec02g0302 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1207.6
Cec05g0782 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1191.4
Cec08g0941 . 47 679 Histidine Kinase Gene Family AT1G09570 74.4 2.8e-281 965.3
Cec05g0782 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1667.9
Cec03g0697 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.6 0.0e+00 1239.2
Cec08g0938 . 146 1179 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1088.6
Cec02g0302 . 26 1069 Histidine Kinase Gene Family AT2G18790 51.9 1.1e-313 1073.2
Cec08g0941 . 44 678 Histidine Kinase Gene Family AT2G18790 53.5 1.7e-198 690.3
Cec02g0302 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1365.1
Cec05g0782 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1153.7
Cec08g0938 . 134 1239 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1116.7
Cec08g0941 . 45 679 Histidine Kinase Gene Family AT5G35840 53.1 9.0e-200 694.5
Cec05g0782 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1703.7
Cec03g0697 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.7 0.0e+00 1276.9
Cec08g0938 . 133 1240 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1136.3
Cec02g0302 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1113.2
Cec08g0941 . 44 678 Histidine Kinase Gene Family AT4G16250 52.7 1.1e-192 671.0
Cec03g0697 . 15 1119 Histidine Kinase Gene Family AT4G18130 62.8 0.0e+00 1368.6
Cec05g0782 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.6 0.0e+00 1268.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30309 PF02518 HATPase_c 6.80E-23 CL0025 Cec TR