Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0072 ATGGCTTCCATTTCTTCTTCTCTTCTTTCTCTCTTCCTCTTCTTCCCTTTCTTTTCAGGTGTAAATTCAGCAACTTTCACCATTTTAAATCAGTGTGGTTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGTCCTCACCATGCCCCCGGCATGGTCCGGCCGTATTTGGGGCCGCACTTATTGCTCCCAAGATGCCGCCGGCAGATTCTCCTGCGCCACTGCCGACTGCGGCTCCGGCGTCGTCGAATGCAATGGTGCTGGTGCTACCCCCCCCGCCACCCTTGCCGAGTTCACTCTCAATGGCGCCGGTGGGCTCGATTTCTTCGATGTCAGCCTTGTTGATGGATACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGAGGAAATTGCACGACCATTGGGTGTGCGACAGATTTAAATAGCGAGTGTCCACCGGAGCTAAGAGTGGTGGCAAGTGACGACGGTGGGCGAAGCATAGCGTGTAAGAGCGCATGTGGCGCATTTGGTGACGCACAATATTGTTGTAGTGGCGAATATGGGAATCCAAACACTTGTCGACCGTCATCTTACTCACAGTTCTTCAAGTCCGCATGTCCTCAAGCTTATAGTTATGCCTACGATGACGGTACCAGTACATTCACTTGCACTTCTGCCAATTACCTCATCACTTTCTGTCCTCCTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTATCCCCGGGCAGTGGACATCTCAAGAGCCGAGCATTCGGGCAGACCGTTGACGTCAGTAGCCGTTATCTCCACCGTGACGGCAGCTCTAAGTCGGCGATTTTTTAGTCTCTTTTAA 897 52.51 MASISSSLLSLFLFFPFFSGVNSATFTILNQCGYTVWPGVLSGAGTSQLSTTGFVLQTGQSNVLTMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGVVECNGAGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPPELRVVASDDGGRSIACKSACGAFGDAQYCCSGEYGNPNTCRPSSYSQFFKSACPQAYSYAYDDGTSTFTCTSANYLITFCPPLSTSVKSSNGQYPRAVDISRAEHSGRPLTSVAVISTVTAALSRRFFSLF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 733222 735907 - CePI673135_10g000720.1 Cec10g0072 212987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0072 298 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Cec10g0072 298 CDD TLP-PA 25 247 - -
Cec10g0072 298 PANTHER OS03G0233200 PROTEIN 12 248 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cec10g0072 298 FunFam THAUMATIN-LIKE PROTEIN 1 24 248 - -
Cec10g0072 298 Pfam Thaumatin family 30 248 IPR001938 -
Cec10g0072 298 PIRSF PR5 1 292 IPR001938 -
Cec10g0072 298 SMART tha2 26 248 IPR001938 -
Cec10g0072 298 Gene3D Thaumatin 24 248 IPR037176 -
Cec10g0072 298 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cec10g0072 298 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cec10g0072 298 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Cec10g0072 298 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cec10g0072 298 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Cec10g0072 298 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1738 Cec-Chr4:36418097 Cec10g0072 Cec-Chr10:733222 1.30E-95 dispersed
Cec08g1473 Cec-Chr8:26469886 Cec10g0072 Cec-Chr10:733222 2.50E-91 dispersed
Cec10g0072 Cec-Chr10:733222 Cec10g1996 Cec-Chr10:34747035 2.40E-67 dispersed
Cec10g0071 Cec-Chr10:720085 Cec10g0072 Cec-Chr10:733222 3.60E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0072 - - - 0.0