Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0178 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCAGCCACAATCCACTCCCCCCAACAGGATGATCCCCAACGCTTCTTATTCCACTAATTTGCCCAATTCTAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAGATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCCTCTAAGCCCTCCGAATCTCCCAATGCGGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCCCCTGATGGGAACATCGCCTTGGGTTTATCCCCAACCCCCATAACTTCTTCCGCCCTTCCTGGCGATTCCGCCGGCATGAACTCCCCGGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAGATGGATGCTTTGGGGACTGGTGGTGTTGGCTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTTTGCAATGTTACACTTCAACCCGCAATGTCAGCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTCTTGATTTCTGACAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGCGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACAGCAGCATCGACAGTTCAGGTTATAGTCGGTAGCTTTCTTGTGGATGGGAAAAAGCTAGGAGCGAGTATACAGAAATCTGGGCCATCTTCTACATCTCCCAATATGTTGAACTTTAATACACCCGTGGCAACAGGCTGCCCATCTGAAGGTGCATCAAATAATTCATCCGATGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATCTACACCAATGCCAACCAACCAATGCATAATATGCAGATGTATCAACTATGGGGGTTCCTCATCAAGTCCTTTGAGGTGCCATGTATTTCTTCTATTACTAATCCTCTTCTCCATTTCTTTCTGTCCTCGCACTTTCCTCATTTCCTCCAACTGATCATTACCATCTCATTGGATTCTTTTCCAATTTCAATGTTTCCCAGCCATGATTTGTTCACTCATTTCCCTCCTAAACCCACATTTGCCAGAACCCCACCTAAGCCATCTCCCTGTTTTCCCAAGCTCATCCTCTTTGCACCATCGAAATCCTAA 1323 47.92 MDSRERSMPSVHQHQPQSTPPNRMIPNASYSTNLPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSALPGDSAGMNSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPAMSAGSVSYEGRYEIISLSGSFLISDNNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFNTPVATGCPSEGASNNSSDDNGGSPLSRGPGIYTNANQPMHNMQMYQLWGFLIKSFEVPCISSITNPLLHFFLSSHFPHFLQLIITISLDSFPISMFPSHDLFTHFPPKPTFARTPPKPSPCFPKLILFAPSKS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1741462 1750368 + CePI673135_10g001780.1 Cec10g0178 213093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0178 440 MobiDBLite consensus disorder prediction 118 132 - -
Cec10g0178 440 MobiDBLite consensus disorder prediction 10 92 - -
Cec10g0178 440 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
Cec10g0178 440 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
Cec10g0178 440 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 280 IPR005175 -
Cec10g0178 440 MobiDBLite consensus disorder prediction 1 161 - -
Cec10g0178 440 Gene3D - 169 295 - -
Cec10g0178 440 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 348 IPR039605 GO:0003680(InterPro)
Cec10g0178 440 MobiDBLite consensus disorder prediction 314 340 - -
Cec10g0178 440 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 281 - -
Cec10g0178 440 CDD DUF296 168 280 IPR005175 -
Cec10g0178 440 ProSiteProfiles PPC domain profile profile. 163 302 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0178 Cec-Chr10:1741462 Cec11g1942 Cec-Chr11:33528232 1.20E-46 dispersed
Cec10g0178 Cec-Chr10:1741462 Cec10g0179 Cec-Chr10:1756956 8.10E-11 tandem
Cec02g2296 Cec-Chr2:40267353 Cec10g0178 Cec-Chr10:1741462 3.50E-15 transposed
Cec08g0955 Cec-Chr8:21395096 Cec10g0178 Cec-Chr10:1741462 3.20E-62 transposed
Cec10g0178 Cec-Chr10:1741462 Cec05g0299 Cec-Chr5:2458679 5.10E-13 wgd
Cec10g0178 Cec-Chr10:1741462 Cec09g1208 Cec-Chr9:12615860 5.00E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0178 - - - 0.0