Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0179 ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCAAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCCGGTGACCACCAAGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACGTCGTTGGCCGCCGCCCTCGCGGACGGCCACCCGGTTCGAAAAACAAGCCAAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTCGGGAGTGGATGCGACGTTTTCGATTGCGTCGCCTCCTATGCCCGCCGGCGACAGCGTGGGATCTGTATTTTGAGTGGCAGCGGTAACGTCACCAACGTTGGCCTCCGCCAGCCAGCGGCGGCAGGGGCGGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCTGGGTCGTTTCTGCCGCCTCCCGCTCCACCTGGCGCCACGAGTTTGACGATATTTTTAGCCGGAGGACAGGGGCAGGTTGTGGGAGGGACGGTGGCCGGGGAATTAATGGCGGCCGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTAGCGTATGAGAGATTGCCACTGGATGAGGAGGATCAGCAGCAAGCTCCAGCAGGCGGCAGCGGCGGAAGCAGCGGCGGAGTGGGTAATAACAACAACAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAATTTGCCACTGCATATGCAAAATGTTCAACTTCCACCCTTTTGA 765 55.29 MAGLDLGSRYLTHLQTPVDDLVNRSGHFSSGDHQDDDDPHQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELMAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGSGGSSGGVGNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1756956 1757720 - CePI673135_10g001790.1 Cec10g0179 213094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0179 254 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
Cec10g0179 254 MobiDBLite consensus disorder prediction 210 236 - -
Cec10g0179 254 FunFam AT-hook motif nuclear-localized protein 79 206 - -
Cec10g0179 254 CDD DUF296 80 163 IPR005175 -
Cec10g0179 254 MobiDBLite consensus disorder prediction 205 236 - -
Cec10g0179 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 192 IPR005175 -
Cec10g0179 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
Cec10g0179 254 PIRSF ESCAROLA 8 250 IPR014476 GO:0003680(InterPro)
Cec10g0179 254 Gene3D - 79 208 - -
Cec10g0179 254 MobiDBLite consensus disorder prediction 22 70 - -
Cec10g0179 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 222 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0071 Cec-Chr6:674333 Cec10g0179 Cec-Chr10:1756956 3.40E-78 dispersed
Cec10g0179 Cec-Chr10:1756956 Cec11g0696 Cec-Chr11:7692374 3.70E-48 dispersed
Cec10g0178 Cec-Chr10:1741462 Cec10g0179 Cec-Chr10:1756956 8.10E-11 tandem
Cec10g0179 Cec-Chr10:1756956 Cec09g1211 Cec-Chr9:12651514 1.10E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0179 - - - 0.0