Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0184 ATGGAAGAAAGTAAAAACCATCTTTCTGAACAAAGTACAAAGGGGTTTGCTAAAAACACCAAGGATAAAAAACTAAATGTGTATGTGTGGGACATGGATGAGACCATCATCCTGCTCAAGTCCTTGTTGAATGGGACATATGCTGAGGCTTTTTGTGGTTCAAAGGATGTTAAAAAGGGTGAAGAACTTGGCAAAATTTGGGAGAAGCAGATTCTTGATCTGTGTGATCATCACTTCTACTATGAACAAATAGAAAACTATAATCAGCCATTTCTTGATGCGTTGAGTGAATATGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGGAAACAAAAGAAAATTGGCTTTTAGGCAACGTGTTATAGCCAATAAGTACAGAGAGGGCCTGCAGAATATCTTTGATCAACAGAAGATGAAGCTCTGGGAAGAGTTATATGAAATGACTGATGTCTATACTGATAGATGGTTTTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCATTTTCAGATAAACGACCACTTGCGTCTGCTGATCAGACACGTAACAGTACTTCTAGAAGTTCTCAGCATGTTAATGTCTTAGTGACTTCTGGTGCATTGATACCCAGCCTTGTGAAATGCTTACTATTTCGACTCGATCATCTAATAACACCCGGAAATGTCTACAGTTCATGGGAAGTAGGCAAACTACAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGTCAAGTGTTCGTTTCTGCGCAATAGGCGATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCCTCACAGGTTTCCCGGTCTGTCTTTGAAAACACTAGGCTTTTACTTCTCTGTCATTTATGTGTCAACTTTTTGGAGGGAGGTTCCTTTTCAAAGTGGTTCTAATGTCAAAGTACTAACTCCCATAAACCTACATTTACTGCAAGCTGCAGTGGTAAATGCCATTTGCCAAGTTCTTCCATATCCAGAGATGGTAGGAAAGAAGACAAAGCACGATGTCGTCTTTGCCTGA 1095 40.55 MEESKNHLSEQSTKGFAKNTKDKKLNVYVWDMDETIILLKSLLNGTYAEAFCGSKDVKKGEELGKIWEKQILDLCDHHFYYEQIENYNQPFLDALSEYDDGRDLSNYDFDQDGFGPPCDDGNKRKLAFRQRVIANKYREGLQNIFDQQKMKLWEELYEMTDVYTDRWFSSARAFLEECSFSDKRPLASADQTRNSTSRSSQHVNVLVTSGALIPSLVKCLLFRLDHLITPGNVYSSWEVGKLQCFQWIKERFDKSSVRFCAIGDGWEECEAAQSLKWPFVKIDLQPGSPHRFPGLSLKTLGFYFSVIYVSTFWREVPFQSGSNVKVLTPINLHLLQAAVVNAICQVLPYPEMVGKKTKHDVVFA 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1827545 1831465 - CePI673135_10g001840.1 Cec10g0184 213099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0184 364 FunFam Eyes absent homolog 26 292 - -
Cec10g0184 364 Gene3D - 26 288 IPR038102 -
Cec10g0184 364 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 24 283 - -
Cec10g0184 364 SFLD Haloacid Dehalogenase 24 283 - -
Cec10g0184 364 NCBIfam EYA conserved domain 25 300 IPR006545 GO:0007275(InterPro)
Cec10g0184 364 PANTHER EYES ABSENT 10 306 IPR028472 GO:0004725(PANTHER)|GO:0004725(InterPro)|GO:0005634(PANTHER)|GO:0030154(PANTHER)|GO:0045739(PANTHER)|GO:0048856(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0184 K15616 - - csv:101203755 556.599
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec04g1397 . 57 630 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 4.4e-191 664.8
Cec02g0662 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 7.7e-180 627.5
Cec10g1555 . 289 658 Protein tyrosine phosphatase (PTP) family AT5G39400 69.2 1.4e-153 539.7
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.3 1.3e-299 1025.8
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.1 2.8e-286 981.5
Cec06g1416 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1085.9
Cec05g1807 . 1 1362 Protein tyrosine phosphatase (PTP) family AT5G58160 50.8 1.4e-305 1046.2
Cec09g1024 . 87 351 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 3.5e-102 368.6
Cec06g2025 . 201 1098 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1098.2
Cec06g0587 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.0e-42 169.1
Cec09g2184 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cec05g2366 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 1.1e-114 409.8
Cec07g0550 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 6.2e-97 350.9
Cec10g1431 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 2.5e-201 698.4
Cec02g1896 . 91 292 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cec09g1099 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cec03g1081 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 1.6e-54 209.9
Cec10g0247 . 83 415 Protein tyrosine phosphatase (PTP) family AT2G35680 55.2 7.2e-100 360.9
Cec11g0207 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.3e-80 297.0
Cec11g0207 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Cec10g0247 . 119 294 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Cec02g1896 . 125 293 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cec09g1099 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.0e-70 260.8
Cec03g1081 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cec03g1081 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.6 3.8e-80 294.7
Cec02g1896 . 116 288 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.5e-57 218.0
Cec07g0343 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.3e-63 239.2
Cec10g1555 . 289 658 Protein tyrosine phosphatase (PTP) family AT5G39400 69.2 1.4e-153 539.7
Cec02g0662 . 33 612 Protein tyrosine phosphatase (PTP) family AT3G19420 66.7 1.9e-220 762.3
Cec04g1397 . 55 630 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 1.0e-197 686.8
Cec04g1397 . 57 630 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 4.4e-191 664.8
Cec02g0662 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 7.7e-180 627.5
Cec06g1416 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1085.9
Cec05g1807 . 1 1362 Protein tyrosine phosphatase (PTP) family AT5G58160 50.8 1.4e-305 1046.2
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.3 1.3e-299 1025.8
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.1 2.8e-286 981.5
Cec02g2310 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 6.7e-69 257.7
Cec10g0184 . 22 308 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 3.2e-107 385.2
Cec04g0863 . 1 721 Protein tyrosine phosphatase (PTP) family AT3G09100 65.7 8.2e-281 963.0
Cec04g0863 . 5 721 Protein tyrosine phosphatase (PTP) family AT5G01290 61.3 1.2e-252 869.4
Cec04g0863 . 86 721 Protein tyrosine phosphatase (PTP) family AT5G28210 52.4 5.8e-180 627.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011188 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31