Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0196 ATGGTATTTTCTTTTGGGATTTGTGAAGAAGGGCTCTGTTTCAAAAGATCAGAGCCGTTGCTTCTCTCTCTAAAGAGGTTGGAGAGAGTTGATTTGGTGCTGAAAAGCGATTTTCCAAAGGGGCTTAGAGTTCTCCTCCTTGATGGAGACAGCAGTTCTGCTGCTGAGATAAAAACAAAGCTTGAGGAAATGGAGTATGTAGTTGTGACTTACTGCAACGAGAATGATGCATTGTCAGCCATTTCGAGCAAACCCGAAACCTTTCATGTTGCCATTGTGGAGGTAACAACAAGTAATCACAACGGGAATTTTAAGTTTCTTGAAGCTGCTAAGGACTTGCCTACCATTATGATTTCAAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCACTTGGTGCGATCGAGTTCCTTCAGAAACCGCTCTCTGAGGACAAATTGAGGAATATTTGGCAACATGTTGTTCATAAGGCATTCAATGCAGGCGGTAGTCCCGTCGCCAATTCTTTAAAGCCTATTAAAGAATCCGTTGCCTCCATGCTGCATCTAGAATTAGAAAACAGCGAAAACGAGAATCAAATCCAAAAAGAGTTAGAAATATTTAGCCGCAACGATGACAATGATCATGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAACATGGAATGCGACTAGTGGATGATGGTGACTGCCATGATCAATTGAACAGTTCGCTCGAGAAAGAGTGCGGGGAGCAAGATGGGGAGTCAAAATCTGTCGAAACTACTTGTATCAATTCACTTGGTGAAGGTACTTCTCAAGTGGAGAACTCTCAGTTACCTGACCAAGAAGGAATAAAAGAAGAAGAGAACTCTGCTGATGGTTGTGGGGCTGCGAGTAACATCGATCACGACACACATGATCGAGACAATATTAGCAGTTCCGAAAAAAACAAGAGCAAACCATGCGGTGTCAATAATCCTTGTGGGACAAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACGCCCGAACTGCACCGAAAATTTGTACAGGCAGTAGAACAACTTGGAGTGAATCAAGCAATTCCTTCTCGAATTCTTGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAGTATCGAATGCATAAGAGGCACATCTTGCCCAAAGAAGAAGATGGGAGTTGGTCTCATTCAAAGGATCCAATGAAGAAGAACTACTATCCACAAAGACCCGTGATGGCCTTCCCCCCTCCTTATCATTCAAATCATATAATGCCAGTTGCTCCAATCTACCCGCCGTGGGGTCATATGGCTTGCCCCTCGCCCGGTGTCCAAATGTGGGTGCCACCCGGTTATCCGCCATGGCGACCACCGGAAATTTGGCCATGGAAGTCCTATCCTGGGATGCATGCTGATACATGGGGTTGCCCTGTGACACCACCTCCTCATAGCCCTCTCTCTTCTCATCCTCAACAGCATATTTCAAGATTTGAAAGCACTGATCCATACGATAAAAGCTACGGCATTGCATTCAGTCCTATCGATCTTCAACTGGCTGATGAAGAAATTGACAAAGTGGTGAAAGAGGCAATCAGCAAGCCATGGTTGCCATTGCCTTTGGGGTTAAAGCCACCTTCAACAGAAAGTGTACTGTCTGAGCTCTCAAGACAAGGCATCTCAACCGTTCCTTCTCACATCAATGGCTCTAAACTACTCCAATGA 1752 44.58 MVFSFGICEEGLCFKRSEPLLLSLKRLERVDLVLKSDFPKGLRVLLLDGDSSSAAEIKTKLEEMEYVVVTYCNENDALSAISSKPETFHVAIVEVTTSNHNGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSPVANSLKPIKESVASMLHLELENSENENQIQKELEIFSRNDDNDHELLEGSDKYPAPSTPQQKHGMRLVDDGDCHDQLNSSLEKECGEQDGESKSVETTCINSLGEGTSQVENSQLPDQEGIKEEENSADGCGAASNIDHDTHDRDNISSSEKNKSKPCGVNNPCGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDGSWSHSKDPMKKNYYPQRPVMAFPPPYHSNHIMPVAPIYPPWGHMACPSPGVQMWVPPGYPPWRPPEIWPWKSYPGMHADTWGCPVTPPPHSPLSSHPQQHISRFESTDPYDKSYGIAFSPIDLQLADEEIDKVVKEAISKPWLPLPLGLKPPSTESVLSELSRQGISTVPSHINGSKLLQ 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2069298 2075461 + CePI673135_10g001960.1 Cec10g0196 213111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0196 583 FunFam Two-component response regulator 334 397 - -
Cec10g0196 583 Gene3D - 42 162 - -
Cec10g0196 583 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 335 394 IPR017930 -
Cec10g0196 583 PANTHER TRANSCRIPTION ACTIVATOR GLK1 32 575 IPR044825 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0045893(InterPro)|GO:0045893(PANTHER)
Cec10g0196 583 Gene3D - 334 396 - -
Cec10g0196 583 MobiDBLite consensus disorder prediction 302 317 - -
Cec10g0196 583 ProSiteProfiles Response regulatory domain profile. 43 156 IPR001789 GO:0000160(InterPro)
Cec10g0196 583 FunFam Two-component response regulator-like APRR2 41 166 - -
Cec10g0196 583 MobiDBLite consensus disorder prediction 204 241 - -
Cec10g0196 583 Pfam Myb-like DNA-binding domain 340 390 IPR001005 -
Cec10g0196 583 SUPERFAMILY Homeodomain-like 336 395 IPR009057 -
Cec10g0196 583 MobiDBLite consensus disorder prediction 269 331 - -
Cec10g0196 583 NCBIfam myb-like DNA-binding domain, SHAQKYF class 338 393 IPR006447 GO:0003677(InterPro)
Cec10g0196 583 SUPERFAMILY CheY-like 40 158 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0196 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0196 Cec-Chr10:2069298 Cec11g0360 Cec-Chr11:3814227 1.10E-18 dispersed
Cec02g1012 Cec-Chr2:15126641 Cec10g0196 Cec-Chr10:2069298 1.30E-35 transposed
Cec10g0196 Cec-Chr10:2069298 Cec09g1251 Cec-Chr9:14030968 4.90E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30320 PF00249 Myb_DNA-binding 6.50E-09 CL0123 Cec TF