Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0229 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGCCCTCCTGATAAGCCAGTATTATGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGAGCGGATCCTGATGAGTATGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATTCCTGATCATGCTCAGAGCTTTCACAAGGCAGTGGATGAAGATACAAGTAATAGATCCAGTTCTGGGTCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCAGATGCAAGTGATCTGACAGGTCCCTCGCAGTCAACAGCATGGGAGGCAATAGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCAACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTACTTTTCGAGAATGAAACTCCAATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTGTAAATGAAGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAAAACAAGGTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTATTGGACAGGGGTTCTTGCAAGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGTAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAGAACCAGCAAGAACTAATGAAGTATCTGCCTTCTGTCGATACTGAAGAACTTCCGGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGATGCAAAAAGAGAAGACTGCAAGACTTTGAGTAGGCTGGTCTTGTTGGATTTGTCAAAATCAAAATGGGTGGAGCGATATCATCTACTCAAGAAATGTAGTAGTGGAGCGTCTGTTCAAGGTTTTGCTGTTGCATCAAGTAGCTTTATGAATGACAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACAAGGACTGCAATGAAAAGTCCCAAAAGGGTGATGACAAAGACAAGCGTGGAAAGCAAGGAACTTGTGGACAGCGATGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGTGGTTCCTTCACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTTCTTCATCCACCCCTGAGTTTTGGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCACTGA 1620 43.27 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAIVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEVHSESSILPVHYETQNKVVNFSTLGIGRKHSIGQGFLQEQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPDAKREDCKTLSRLVLLDLSKSKWVERYHLLKKCSSGASVQGFAVASSSFMNDKRVLDGQNKKLSETRTAMKSPKRVMTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPPLSFGAQQASNSSSSVNLRLMHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2524327 2531208 - CePI673135_10g002290.1 Cec10g0229 213144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0229 539 Pfam Asx homology domain 284 368 IPR028020 -
Cec10g0229 539 Gene3D - 3 83 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec10g0229 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0229 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0229 539 MobiDBLite consensus disorder prediction 110 124 - -
Cec10g0229 539 MobiDBLite consensus disorder prediction 520 539 - -
Cec10g0229 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0229 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cec10g0229 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 370 IPR044589 -
Cec10g0229 539 MobiDBLite consensus disorder prediction 103 124 - -
Cec10g0229 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0229 539 Gene3D - 289 374 IPR038108 -
Cec10g0229 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0229 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0229 Cec-Chr10:2524327 Cec09g1299 Cec-Chr9:15775558 8.00E-202 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1249 . 85 351 C2C2-Gata Transcription Factor Family AT5G25830 54.0 7.9e-67 251.1
Cec07g1441 . 96 287 C2C2-Gata Transcription Factor Family AT3G60530 50.5 6.2e-45 177.9
Cec04g1704 . 111 287 C2C2-Gata Transcription Factor Family AT4G36240 50.3 1.8e-41 166.4
Cec10g0229 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.9 1.6e-138 490.0
Cec09g1299 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 4.7e-135 478.4
Cec10g0229 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 3.9e-120 428.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30323 PF13919 ASXH 2.80E-09 No_clan Cec TF