Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0242 ATGATGTACGGACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTCGCCCTTGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCCAGTTTCGGCAGTTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCGTCGGATGCCTTCAATTTTGGATTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATCGCCGGAAGTTAAGGTGCCGGTGGCGGTGGCGGAGGCGGCGGCGGCGACGCCGTTGCCGGCGGTGGTTCCGGAGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTATCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCCGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCGTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCTCGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGCTGGCGTGGCAAAGTGTACAAGTGGCGACAAATGA 870 57.7 MMYGQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNISPEVKVPVAVAEAAAATPLPAVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGSAVTPALASPELIQLVVGTSELQVEAGVAKCTSGDK 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2672790 2673659 - CePI673135_10g002420.1 Cec10g0242 213157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0242 289 Gene3D AP2/ERF domain 148 210 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0242 289 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0242 289 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0242 289 PANTHER DNA-BINDING DOMAIN 133 238 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cec10g0242 289 FunFam Ethylene-responsive transcription factor 2 148 208 - -
Cec10g0242 289 MobiDBLite consensus disorder prediction 213 257 - -
Cec10g0242 289 Pfam AP2 domain 149 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0242 289 MobiDBLite consensus disorder prediction 218 242 - -
Cec10g0242 289 SMART rav1_2 149 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0242 289 CDD AP2 148 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0242 289 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0242 289 SUPERFAMILY DNA-binding domain 149 209 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0012 Cec-Chr5:147065 Cec10g0242 Cec-Chr10:2672790 1.40E-22 dispersed
Cec05g0013 Cec-Chr5:151837 Cec10g0242 Cec-Chr10:2672790 1.30E-24 dispersed
Cec09g0746 Cec-Chr9:6805838 Cec10g0242 Cec-Chr10:2672790 2.40E-23 dispersed
Cec09g0747 Cec-Chr9:6822629 Cec10g0242 Cec-Chr10:2672790 5.00E-20 dispersed
Cec10g0242 Cec-Chr10:2672790 Cec07g0295 Cec-Chr7:2893352 4.80E-20 dispersed
Cec10g0242 Cec-Chr10:2672790 Cec10g0243 Cec-Chr10:2705351 7.70E-26 tandem
Cec01g0441 Cec-Chr1:4578912 Cec10g0242 Cec-Chr10:2672790 3.10E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30324 PF00847 AP2 1.20E-14 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0242 K09286 - csv:101203663 427.943