Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0252 ATGGAAGATCCTCTTCACAGATTCCAATTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAACTTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCATTCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCACCGCCGTCGCCGCCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG 681 46.99 MEDPLHRFQFHSQSSSSSSSDIKTCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLIRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSPPSDCFAYRGSLL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2843932 2844612 + CePI673135_10g002520.1 Cec10g0252 213167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0252 226 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0252 226 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0252 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 184 IPR051032 -
Cec10g0252 226 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677(InterPro)
Cec10g0252 226 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0252 226 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0252 226 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0252 226 MobiDBLite consensus disorder prediction 1 23 - -
Cec10g0252 226 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Cec10g0252 226 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0252 226 MobiDBLite consensus disorder prediction 8 23 - -
Cec10g0252 226 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0252 Cec-Chr6:2742331 Cec10g0252 Cec-Chr10:2843932 4.20E-33 dispersed
Cec08g0157 Cec-Chr8:3036294 Cec10g0252 Cec-Chr10:2843932 2.20E-26 dispersed
Cec10g0252 Cec-Chr10:2843932 Cec11g0235 Cec-Chr11:2512522 1.30E-36 dispersed
Cec10g0252 Cec-Chr10:2843932 Cec06g0984 Cec-Chr6:14046733 7.60E-37 transposed
Cec10g0252 Cec-Chr10:2843932 Cec11g1573 Cec-Chr11:30021244 7.60E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30328 PF00847 AP2 5.10E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0252 - - - 0.0