Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0303 ATGTCATCTTCTTCGATTCCTAACGCTTTCAATCAAGTTCCTCCTCCTCCTTCTTCCGAGCAGCTTTGCTATGTCCATTGTAACATTTGCGACACGGTTTTAGCGGTGAGTGTTCCTTGTAGTAGTTTGTTCAAAAGGGTCACCGTTCGTTGTGGCTATTGCGCCAATCTTCTGCCGGTGAACATGTGTGGTGGCATGCTTCTCCCTTCTTCAAATCAGTTTCATGCCTTTGCTCACTCGACCCCTTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATTCAAATCCAAATCCAAATCCAAATCCAAATTTTCTGATGAACCAAGCAGAAGGAATTGATTTAACCATGGCCACTCGTGTAGCTAATGATCTTCCAAGGCAGCCTCCAAGCATAAATAGACCTCCAGAAAAGAGGCAAAGGGTGCCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGGATTAAGGCTGCCAATCCAGACATATCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTTCTTCTTCCTGA 579 44.91 MSSSSIPNAFNQVPPPPSSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGMLLPSSNQFHAFAHSTPFLSPNTHNFLEEISNSNPNPNPNPNFLMNQAEGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGSSS 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3720703 3724948 - CePI673135_10g003030.1 Cec10g0303 213218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0303 192 PANTHER PROTEIN YABBY 6-RELATED 19 191 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cec10g0303 192 SUPERFAMILY HMG-box 130 183 IPR036910 -
Cec10g0303 192 MobiDBLite consensus disorder prediction 127 146 - -
Cec10g0303 192 Gene3D High mobility group box domain 131 185 IPR036910 -
Cec10g0303 192 Pfam YABBY protein 18 189 IPR006780 GO:0007275(InterPro)
Cec10g0303 192 FunFam axial regulator YABBY 5-like 128 186 - -
Cec10g0303 192 CDD HMG-box_SF 144 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1293 Cec-Chr6:26175656 Cec10g0303 Cec-Chr10:3720703 1.50E-38 dispersed
Cec10g0303 Cec-Chr10:3720703 Cec11g0318 Cec-Chr11:3430874 6.90E-39 dispersed
Cec01g0381 Cec-Chr1:3962653 Cec10g0303 Cec-Chr10:3720703 6.50E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30331 PF04690 YABBY 3.60E-69 CL0114 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0303 K25796 - csv:101219601 340.502