Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0316 ATGGAGTGTGCAGCAACTAAATCCACCGATATGCACTGCATTCTTACGCGCCGCCCTACAAAGCCCCGCCACCGCTCACCTCCAGAGACTCCCGCCGTCAAGCGCCTACCGGCCGATTCTTCTGCTACTCGCTCTTGTATTCTGGAGAAAGAGATTCTCGCCATGATAACGTTGGTTAGATTTCGGAATTTATCGTACAAATTCCGAAACGAAACTGATTTAGTTAGATGTTTTCATTCCGGAACGAATCTGAAATCCAATTCTCCGGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCAGCTTCCTTCGGTGCGGTTCGGTACATGGTGGCGTATGCGAATCGGCATGCGTTTAGTTATGTGCCGCAAGTTGTTAGAGAGCAGAGAAGAGAGAGGAAGATGCTTAATCAATTGGAGAGTAAGGGTGTGATTGAATCGATTGAGCCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTACGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTAGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCCAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCATGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTTGAGATTATGGATAGGAAAAGGGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGGATATTTTGAAGGAGGCCAGGTTGAGATGTCTCAGGACAGTTGTTGTAGGGGATTTCAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGCAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTTGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAGTTGGAGAAGAAAGTGTTTGGTTTAGATGATATAGGCGAGGATGAAGATGTTGAAGAAGGTTCTGTTGATGGGGGACTTTGTAAGAATATGCAAAATGATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGATACTGAAACTGTTTCCCCACCATCATGGAAATGA 1266 43.84 MECAATKSTDMHCILTRRPTKPRHRSPPETPAVKRLPADSSATRSCILEKEILAMITLVRFRNLSYKFRNETDLVRCFHSGTNLKSNSPDSSSSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIESIEPYLCRVCGRNFYTNEKLVNHFTQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFFVKTVSDKHEAADVELRNDMVEIMDRKRAECLVLVSDDSDFVDILKEARLRCLRTVVVGDFNDGPLKRNADTGFSWKQILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFGLDDIGEDEDVEEGSVDGGLCKNMQNDDRGAWWDLSSDADTETVSPPSWK 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3806233 3807554 - CePI673135_10g003160.1 Cec10g0316 213231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0316 421 MobiDBLite consensus disorder prediction 1 37 - -
Cec10g0316 421 ProSitePatterns Zinc finger C2H2 type domain signature. 175 196 IPR013087 -
Cec10g0316 421 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 85 413 - -
Cec10g0316 421 Gene3D - 88 333 - -
Cec10g0316 421 Pfam NYN domain 245 325 IPR021139 GO:0004540(InterPro)
Cec10g0316 421 CDD PIN_LabA-like 183 314 - -
Cec10g0316 421 MobiDBLite consensus disorder prediction 14 30 - -
Cec10g0316 421 SUPERFAMILY beta-beta-alpha zinc fingers 170 199 IPR036236 -
Cec10g0316 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2233 Cec-Chr5:33824559 Cec10g0316 Cec-Chr10:3806233 4.90E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30333 PF01936 NYN 6.60E-10 CL0280 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0316 - - - 0.0