Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0360 ATGGCATCTTCAAGGTCCCCGAATGGATCTTCTGATGATATCCTCGATACCTCCCCTTTGATGGGGAATTCGAACCGGTCGCCGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTACGTCAGGCGGCGAGGTTTCTTAGGCAGGCCAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTGATTCTTGACATCGTCTGGAATTTCGCTTTTGTTGTCGTTGCTGCTACCGTTTTGGTTCTCAGCCGCAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGCATTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGACGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGCTCGAGGGCAAACTCGAGTCATTATGTATCATGGGCTCAATTGGATGATAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACCATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGTGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGATGACACCGAGAAATTCTCCACTGATGTACAGGAACCTCTTGGTGGGATAATGACCGAGTGTGGTACAGATTCACCCATTGAACGCGCCCTCTCGCAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTCGAGCTACGAGAGCTCCCGTGTGGTCACCACTTCCACTGTGCCTGCGTTGATAAGTGGCTGTATATTAACGCCACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAATAGCAATCTTGCTCAAGAGGAAGTTTAA 1152 48.09 MASSRSPNGSSDDILDTSPLMGNSNRSPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSWAQLDDNDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDTEKFSTDVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLAQEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4268197 4273398 + CePI673135_10g003600.1 Cec10g0360 213275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0360 383 PANTHER TARGET OF ERK KINASE MPK-1 42 373 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cec10g0360 383 MobiDBLite consensus disorder prediction 1 36 - -
Cec10g0360 383 SMART ring_2 328 368 IPR001841 -
Cec10g0360 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 375 IPR013083 -
Cec10g0360 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Cec10g0360 383 SUPERFAMILY RING/U-box 319 375 - -
Cec10g0360 383 MobiDBLite consensus disorder prediction 1 28 - -
Cec10g0360 383 FunFam E3 ubiquitin-protein ligase At1g12760 314 379 - -
Cec10g0360 383 Pfam Ring finger domain 327 369 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0661 Cec-Chr1:7201385 Cec10g0360 Cec-Chr10:4268197 9.30E-90 dispersed
Cec05g0210 Cec-Chr5:1711977 Cec10g0360 Cec-Chr10:4268197 1.30E-126 dispersed
Cec10g0360 Cec-Chr10:4268197 Cec10g1676 Cec-Chr10:31267463 6.70E-70 dispersed
Cec10g0360 Cec-Chr10:4268197 Cec07g1624 Cec-Chr7:31773142 4.60E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0360 - - - 0.0