Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0379 ATGGCCTCCACCTCCTCCAAGAGACATGATCACTACAAAGGAATCCGCTGCCGCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACCCCGGAGATGGCTGCTGCTGCCTACGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCAGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCCATGTTGCTGCCGCGTTGAAAAAAGTTGATGATCAAGGAGAAAACACTGACCACAGCTTTCACCACCAGTCTCTGCCAACCAATGAGTTTGTCGACGAAGAGGCGCTGTTCGGAATGCCGAATCTGCTTATTGACATGGCCGAGGGAATGCTGTTGTCGCCACCACGAATGAGCTCGTCGCCGTCCCGACATGACTACTACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 510 53.73 MASTSSKRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAHVAAALKKVDDQGENTDHSFHHQSLPTNEFVDEEALFGMPNLLIDMAEGMLLSPPRMSSSPSRHDYYSWNSSGDGNLWSYH 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4559771 4560280 - CePI673135_10g003790.1 Cec10g0379 213294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0379 169 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0379 169 SMART rav1_2 11 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0379 169 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677(InterPro)
Cec10g0379 169 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0379 169 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0379 169 FunFam Ethylene-responsive transcription factor 2 10 68 - -
Cec10g0379 169 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 168 IPR045277 GO:0003700(InterPro)
Cec10g0379 169 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0938 Cec-Chr5:8187321 Cec10g0379 Cec-Chr10:4559771 2.30E-42 dispersed
Cec10g0379 Cec-Chr10:4559771 Cec10g1945 Cec-Chr10:34263210 2.10E-36 dispersed
Cec10g0379 Cec-Chr10:4559771 Cec01g0304 Cec-Chr1:3076825 9.90E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30335 PF00847 AP2 5.60E-11 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0379 - - - 0.0