Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0393 ATGTTGAACTTAGGATTCATCGTTCAAGCTCGGGATCAAGTTGTAATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCAAGAACATACGGTATCCGAAAACGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACCGAGCAACAGAGTTCGGTACGTTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAATTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAAAGGCAACAACAATCCGTTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATGCTTCCACAATCTTGTTCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACATCATACATGGAGAAGGACGATGTGGGTAAGACTGTGTTGGATGATCAAAGACCTTTTGATTCTCTGTGCGGTGGTGGTGAACATTCTTCGCCACTTGATGAGCAACCAGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGCTATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAAGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGCAGCGATTGGATCTTCTGATTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGTTCCAGTTTGGGAAGATTCACAAAAGGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATACTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGATGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCATCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCACGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTCGAAAGGCCAGCCTTTGGCTTTGCTGGAAGACAGCACATGGGCACTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCATTGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2283 46.3 MLNLGFIVQARDQVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPQEHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPIFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNKGNNNPFDDNSTSFAFRPSVESGSSFILSAAASKTASATMLPQSCSRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVLDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGSSDSHINMQPDIPAQAGQQSAEVPVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHTETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQHMGTAHGFAFGMNQPGLGNLTMAAVGQAKLPVMPLHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4729290 4733555 - CePI673135_10g003930.1 Cec10g0393 213308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0393 760 MobiDBLite consensus disorder prediction 393 424 - -
Cec10g0393 760 MobiDBLite consensus disorder prediction 610 636 - -
Cec10g0393 760 ProSiteProfiles WRKY domain profile. 551 616 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 MobiDBLite consensus disorder prediction 618 636 - -
Cec10g0393 760 MobiDBLite consensus disorder prediction 460 491 - -
Cec10g0393 760 SUPERFAMILY WRKY DNA-binding domain 548 616 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 SUPERFAMILY WRKY DNA-binding domain 340 400 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 Gene3D WRKY domain 543 609 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 SMART WRKY_cls 341 399 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 SMART WRKY_cls 556 615 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 ProSiteProfiles WRKY domain profile. 342 400 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 MobiDBLite consensus disorder prediction 406 424 - -
Cec10g0393 760 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 202 636 IPR044810 GO:0003700(InterPro)
Cec10g0393 760 Gene3D WRKY domain 335 401 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 MobiDBLite consensus disorder prediction 298 348 - -
Cec10g0393 760 FunFam WRKY transcription factor 332 401 - -
Cec10g0393 760 MobiDBLite consensus disorder prediction 460 524 - -
Cec10g0393 760 FunFam WRKY transcription factor 33 543 609 - -
Cec10g0393 760 Pfam WRKY DNA -binding domain 557 614 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0393 760 Pfam WRKY DNA -binding domain 342 398 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1078 Cec-Chr3:22360113 Cec10g0393 Cec-Chr10:4729290 2.60E-82 dispersed
Cec10g0393 Cec-Chr10:4729290 Cec10g0454 Cec-Chr10:5399467 5.80E-81 dispersed
Cec10g0393 Cec-Chr10:4729290 Cec05g2623 Cec-Chr5:37015293 3.10E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30339 PF03106 WRKY 3.10E-24 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0393 K18835 - csv:101207853 1315.06