Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0423 ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGATAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTTAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCTGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 528 55.87 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5109684 5110211 + CePI673135_10g004230.1 Cec10g0423 213338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0423 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0423 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cec10g0423 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982(InterPro)
Cec10g0423 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982(InterPro)
Cec10g0423 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cec10g0423 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cec10g0423 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cec10g0423 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 124 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cec10g0423 175 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Cec10g0423 175 MobiDBLite consensus disorder prediction 152 175 - -
Cec10g0423 175 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1022 Cec-Chr7:24883369 Cec10g0423 Cec-Chr10:5109684 4.50E-42 dispersed
Cec09g0592 Cec-Chr9:5127052 Cec10g0423 Cec-Chr10:5109684 3.30E-39 dispersed
Cec10g0423 Cec-Chr10:5109684 Cec10g2065 Cec-Chr10:35366968 9.40E-35 dispersed
Cec10g0423 Cec-Chr10:5109684 Cec02g1461 Cec-Chr2:32002614 2.70E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30341 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0423 K08065 - csv:101204640 311.997