Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0441 ATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAATGGTGGAGCCGCCACCGGCAACTCCCCAGCAACCAGCCCCGTCCCGGTGGCGACCGCAAACAATGAGCAAAGCCAACAATGCGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCCGATGACGCCAAAGAGACTATCCAAGAATGTGTGTCAGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGGGAGCAGCGCAAGACGGTAACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAATCGCTACCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTATGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA 627 56.62 MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5277628 5278254 + CePI673135_10g004410.1 Cec10g0441 213356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0441 208 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0441 208 SUPERFAMILY Histone-fold 55 148 IPR009072 GO:0046982(InterPro)
Cec10g0441 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 122 IPR003958 -
Cec10g0441 208 MobiDBLite consensus disorder prediction 1 48 - -
Cec10g0441 208 FunFam Nuclear transcription factor Y subunit B-6 47 159 - -
Cec10g0441 208 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Cec10g0441 208 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Cec10g0441 208 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Cec10g0441 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cec10g0441 208 Gene3D Histone, subunit A 45 159 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0441 Cec-Chr10:5277628 Cec10g2065 Cec-Chr10:35366968 7.20E-26 dispersed
Cec10g0441 Cec-Chr10:5277628 Cec02g1461 Cec-Chr2:32002614 2.00E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30342 PF00808 CBFD_NFYB_HMF 2.30E-25 CL0012 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0441 K08065 - csv:116402762 379.022