Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0454 ATGGACCCCACTGACTCCGACCTCGCCGATCCATCTCATGCCTCCTCCTCCGCTGGCGCTAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTCTAGGTCCCCTTGCATTACCATCCCTCCTGGCCTCAGCCCCACTTCCTTTCTCGACTCTCCTGTTCTGCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCGATGGCACATGACTCTTCTAGCTCAGCTATTTATCCAGTGACCACCATGGCTTTTTCAAATACTAATGCCTCAGATGAAGGAAGATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAATTGAGATCAATGTCGTTTCAAATGATTTGAGCCGATCAACCCAGATGGATACACATCCAATTGGCTCAGGGGCTAGTGCTCCTGAAGCCGATGGAGATGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTTGCATTCCAGTGGTTTCAGATAGGTTGTCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAGCTGATATTATCTATAAGGGTACCCACGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGATTGTTCAGCATGTATGCTCAGACAGTTCATACCCTTGAGCCAAATGGAACTACAGAACCATCACTGGCCGCAAATGATAGCATCAACGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCAGGATGAGGTTGATGACGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGTGGTTTCGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTAGATATACTGGATGACGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAATCCCAACCCAAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTAGAAAACATGTTGAAAGAGCATCCCATGACCCGAAAGCTGTTATAACTACGTATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCGGGGGTCCATCGACAATTGCACCATCGAGGTATAGACTCGAGGAGAGCGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACTGGCACGGGTGGTGAGAATAGATCAAATGATTACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCAAGAGAACTCAGCCCCGACCTATTTCGGTGTGATCAATAGAGGTATAAATCAACATGGATCAAGAGAGAGTTTGAGTGAAAGCCACAATAGGGAGATTGCTCCGCTAAATCATTCGTCTCACCCATATCCGACGAGCATTGGGAGAATACTAACAGGGCCTTAA 1728 45.95 MDPTDSDLADPSHASSSAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPVTTMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQSSEVQVQGQPQPFTAPPMTKIEINVVSNDLSRSTQMDTHPIGSGASAPEADGDDINHSLNTNSRVQAPQSDPKGSCIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIADIIYKGTHDHPKPQPSRRYSASASVNVQEDGPDKPSPLTGQDDRLFSMYAQTVHTLEPNGTTEPSLAANDSINEGAGTTLPCKNQDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVGGPSTIAPSRYRLEESDTISLDLGVGIGTGTGGENRSNDYRQALHSQLVENQTPNGNFNFEVVQENSAPTYFGVINRGINQHGSRESLSESHNREIAPLNHSSHPYPTSIGRILTGP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5399467 5405145 - CePI673135_10g004540.1 Cec10g0454 213369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0454 575 MobiDBLite consensus disorder prediction 128 142 - -
Cec10g0454 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 457 IPR044810 GO:0003700(InterPro)
Cec10g0454 575 MobiDBLite consensus disorder prediction 125 144 - -
Cec10g0454 575 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 Pfam WRKY DNA -binding domain 390 447 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 MobiDBLite consensus disorder prediction 551 567 - -
Cec10g0454 575 MobiDBLite consensus disorder prediction 161 209 - -
Cec10g0454 575 FunFam WRKY transcription factor 203 273 - -
Cec10g0454 575 SUPERFAMILY WRKY DNA-binding domain 381 449 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 MobiDBLite consensus disorder prediction 183 198 - -
Cec10g0454 575 MobiDBLite consensus disorder prediction 445 467 - -
Cec10g0454 575 Gene3D WRKY domain 206 273 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 MobiDBLite consensus disorder prediction 264 301 - -
Cec10g0454 575 ProSiteProfiles WRKY domain profile. 208 272 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 MobiDBLite consensus disorder prediction 1 20 - -
Cec10g0454 575 FunFam WRKY transcription factor 33 376 442 - -
Cec10g0454 575 SUPERFAMILY WRKY DNA-binding domain 210 272 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 MobiDBLite consensus disorder prediction 541 575 - -
Cec10g0454 575 Gene3D WRKY domain 376 442 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 SMART WRKY_cls 213 271 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0454 575 SMART WRKY_cls 389 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0284 Cec-Chr2:2626157 Cec10g0454 Cec-Chr10:5399467 1.80E-66 dispersed
Cec10g0393 Cec-Chr10:4729290 Cec10g0454 Cec-Chr10:5399467 5.80E-81 dispersed
Cec10g0454 Cec-Chr10:5399467 Cec11g0476 Cec-Chr11:5119750 4.80E-72 dispersed
Cec10g0454 Cec-Chr10:5399467 Cec05g2623 Cec-Chr5:37015293 5.90E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30344 PF03106 WRKY 3.30E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0454 - - - 0.0