Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0456 ATGGTGAAATCCCATCTCCGATTCCTTCCCCTTTCTACTTTTTCTGGGATTCTTCTCTTCATTGTTATTCCCTTGATTGAATCTGGGTCTTCTTTTTTTTCTTCTTCCAAGCGATTGCCAGTTGGGTTTTGTCTGAATTTCCAAAAAAGAAAAAAAAAGAGGATGGAATCAGATCTTGGCAAGCTCTTCATTGGCGGAATTTCGTGGGATACTGATGAAGAGCGTCTTAGGGAATATTTTGGCAACTATGGCGAAGTGGTCGAGGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGCTGTTGCCGAGCGAGTCATTTTGGAGAAGCACGTCATCGATGGTCGAACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAATAGTGGTAGCATTCATGGTTCTCCTAGCTCGGGACGAACAAAAAAGATTTTCGTTGGAGGTTTAGCTTCGACAGTCACTGAGGCTGACTTTCAGAAGTATTTTGATCAGTTTGGAACAATCACTGATGTTGTTGTTATGTATGATCACAGCACCCAAAGGCCAAGGGGTTTTGGCTTCATTACTTATGACTCGGAGGAGTCTGTTGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTTAAGAGAGCAATCCCGAAAGAGCTAACCCCAGGGCCCAACCGGAGCCCTCTTGTAGGATATAACTATGGTATGAGTAGGCCTAGTGGTTTTCTTAACAGCTATACTCAAAGCTATAATATGAGTCCTTTGGGAAGTTATGGAGTCCGGGCAGATGGTAGGTTGAGTCCAATAATTAGCAGTCGAACTGGGGTTCCTCATTTTGGTACTGCTAATTATGGAGTGGGTGTGAATTTGGAGCAAGGGATGAGACAAGGCTATGGCAGGACTTTGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAATTCCTATTATAATGGCAATTCAAATAGGTACATTGCCCCGATTGGCTACAGCGGGGGCAATGGAAGAGGTGATTCCCCCTTAAGCTCAAGTACGTGGAATGTTTGGGGAAATGGAAGTATGAGCACCGCCATGAACTCTTCCGGCCCTGGCACTTTCTCTGGCTCTGGAACGGGGAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAGTTTGCCTGCTGTTGTTAATCATGTTGGAGGGAATGCTCCTGGCTATACTAATAATGGTTATGCAATTGGAGACAATGAGCTCGGGTTCAGAGGAGGCTATGGAAGAAATGGAGTAGTCTCGAATGTGGCAACACGAAAAGCATTTGTTGAAACGACCAATGGTTATGAGAGGTCATATAGGGATTTGTATCGTGATGAAGTGGTGCATGATGATTCGACTTGGCAGTCTGCCGCTCCTGAACTGGATGGTTCTGTGTCTTTTGGTTATGGTCTTGGTAACCTTGCTTCAGATGATCCAGCCAAGAGTTCCGAGAGTTTTCTTGCAAGTTATGATGTTTCAAGCAGACAATCAACTAGAGGAATTGCTGCGTAG 1593 44.38 MVKSHLRFLPLSTFSGILLFIVIPLIESGSSFFSSSKRLPVGFCLNFQKRKKKRMESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVILEKHVIDGRTVEAKKAVPKDDQNMLNRNSGSIHGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQEQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGSGTGNFRVAYGNNDDNWSLPAVVNHVGGNAPGYTNNGYAIGDNELGFRGGYGRNGVVSNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPAKSSESFLASYDVSSRQSTRGIAA 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5443618 5445999 + CePI673135_10g004560.1 Cec10g0456 213371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0456 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723(InterPro)
Cec10g0456 530 SUPERFAMILY RNA-binding domain, RBD 158 259 IPR035979 GO:0003676(InterPro)
Cec10g0456 530 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 55 428 - GO:0003729(PANTHER)|GO:0006417(PANTHER)
Cec10g0456 530 FunFam Heterogeneous nuclear ribonucleoprotein 1 157 244 - -
Cec10g0456 530 Gene3D - 157 243 IPR012677 -
Cec10g0456 530 Gene3D - 60 142 IPR012677 -
Cec10g0456 530 CDD RRM2_Hrp1p 161 238 - -
Cec10g0456 530 FunFam Heterogeneous nuclear ribonucleoprotein 1 59 141 - -
Cec10g0456 530 Pfam RNA recognition motif 62 127 IPR000504 GO:0003723(InterPro)
Cec10g0456 530 Pfam RNA recognition motif 162 220 IPR000504 GO:0003723(InterPro)
Cec10g0456 530 SUPERFAMILY RNA-binding domain, RBD 55 157 IPR035979 GO:0003676(InterPro)
Cec10g0456 530 CDD RRM1_hnRNPA_hnRNPD_like 62 132 - -
Cec10g0456 530 SMART rrm1_1 161 233 IPR000504 GO:0003723(InterPro)
Cec10g0456 530 SMART rrm1_1 61 132 IPR000504 GO:0003723(InterPro)
Cec10g0456 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 136 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0456 K14411 - - csv:101220541 909.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1087 Cec-Chr1:16653494 Cec10g0456 Cec-Chr10:5443618 7.20E-125 dispersed
Cec02g0975 Cec-Chr2:13965556 Cec10g0456 Cec-Chr10:5443618 3.10E-111 dispersed
Cec02g1340 Cec-Chr2:30417616 Cec10g0456 Cec-Chr10:5443618 3.10E-32 dispersed
Cec06g0746 Cec-Chr6:8759579 Cec10g0456 Cec-Chr10:5443618 8.40E-67 dispersed
Cec08g0254 Cec-Chr8:4821210 Cec10g0456 Cec-Chr10:5443618 1.30E-29 dispersed
Cec08g0255 Cec-Chr8:4822338 Cec10g0456 Cec-Chr10:5443618 7.00E-28 dispersed
Cec10g0456 Cec-Chr10:5443618 Cec10g1396 Cec-Chr10:28281004 1.10E-41 dispersed
Cec10g0456 Cec-Chr10:5443618 Cec07g0162 Cec-Chr7:1714460 3.20E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
Vvi19g706 . . . . Bpe09g00116 . . Bma13g01125 . . Cma01g01065 Cma09g01022 Car01g00939 Car09g00926 Sed08g1410 Cpe06g00830 Cpe02g00832 Bhi09g01794 Tan01g3210 Cmetu01g2405 . . Mch11g1296 . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 . . . . Lsi02g01814 . . . . . Bda05g00687 Bda12g00975 . Bpe03g00748 . . . Cmo01g01107 Cmo09g01025 . . . . . . . . . . . . . Cla09g02092 Cam09g2178 Cec09g2244 . . . . . . Chy01g01127 Cme01g00879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46