Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0491 ATGAGGAGAGGGAGAGGGGCGGCGGTGCCGGTACCGGCGGCGCGTGAACCACCTACCACCGGATCGGAACGGAGATACAGAGGAGTTCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACAAGAGTTTGGTTAGGGACCTTCGATTCCGCCGAAGACGCCGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGAGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCCACTTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATTCCCGATTTCAGATTAACCCTCATAGACCTACTTCCAGCAGTTTGAGCTCCACCGTCGAATCCTTCAGCGGTCCTCGCCCTCCCTCCGCCGCCGCTACTACGACCACTTCCCCCTCCCGCCGTTACCCACGTACACCGCCTCTCCTCCCTGAAGATTGCCATAGCGATTGTGATTCTTCCTCTTCCGTCATCGACGATGGCGACGACATCGCTTCCTCCTCCATCCTTCCTCGGAAACCACCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTGA 651 56.07 MRRGRGAAVPVPAAREPPTTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDSRFQINPHRPTSSSLSSTVESFSGPRPPSAAATTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSILPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5912195 5912845 - CePI673135_10g004910.1 Cec10g0491 213406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0491 216 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0491 216 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0491 216 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Cec10g0491 216 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677(InterPro)
Cec10g0491 216 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0491 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 174 - -
Cec10g0491 216 MobiDBLite consensus disorder prediction 94 169 - -
Cec10g0491 216 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0491 216 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0491 216 MobiDBLite consensus disorder prediction 1 28 - -
Cec10g0491 216 CDD AP2 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0491 216 MobiDBLite consensus disorder prediction 113 150 - -
Cec10g0491 216 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0393 Cec-Chr8:10961266 Cec10g0491 Cec-Chr10:5912195 1.30E-18 dispersed
Cec09g0317 Cec-Chr9:2635823 Cec10g0491 Cec-Chr10:5912195 3.30E-19 dispersed
Cec09g2188 Cec-Chr9:38802575 Cec10g0491 Cec-Chr10:5912195 6.00E-52 dispersed
Cec10g0491 Cec-Chr10:5912195 Cec11g1829 Cec-Chr11:32467084 5.90E-23 dispersed
Cec10g0491 Cec-Chr10:5912195 Cec02g1900 Cec-Chr2:36846166 5.20E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30346 PF00847 AP2 5.00E-14 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0491 K09286 - csv:101219993 295.049