Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0500 ATGGTCTCCCACAGACCCTTCACCTTCAGCTTCTTCTTCCTCTTCTTCTTCCCAATTTTGTTTAGGGTTTCAAATTCTTCCTTAGTTCCAGCAATCTACGTGTTTGGAGACTCATTAGTGGATGTTGGAAACAACAACCACTTGAAGCTCTCACTAGCCAAAGCCAACTTTCCCCACAATGGACTTGATTTTCCTACCAACAAGCCCACCGGAAGGTTCTCTAATGGCAAGAATGCTGCCGACTATATTGCTGAGAAGGTGGGGTTGCCGACTTCGCCGCCATATTTGTCTCTCATATCCCAGTTTAGAAAGATTATCAATACGACACCGTTTAAGACAGGCGTCAGCTTCGCTTCTGGAGGAGCCGGAATTTTTAATGAAACAAATAATCTTTTTAAACAATCGGTGGCAATGGACCAACAAATAGTGTTCTATTCAACGGTGTACAAAAATCTGGTAGGAGAGCTGGGATCGTCTGGAGCGGCAGCACACCTATCCAAATCTCTATTTACGGTTGTGATTGGAAGTAACGACATCTTCGGCTATCATCAGTCGTCCGATCTGCGTAATAAGTACTCCCCACCGCAATACTTGGACTTGATGGCCTCCACTCTGGAGTCGCAGCTTAAGCGATTACATGGGTATGGGGCAAGAAAATATGTGGTGGGTGGAATTGGATTAGTGGGGTGTGCACCATCACAAAGGAAGAGAAGCAAGAGAGGGGAATGCGATGAGGAAGTCAATAATTGGGCCTCAACTTACAACATTGCTCTAAAGTCGATGCTTCAAAGACTAAAATCGGAGCTCAAAGACATTTCATTCTCCTACTTTGATGTATATCAAGTCATGTCCAACTTCGTTCGTGCGCCATCTTCTTATGGATTCACAGAGATTAAAAGTGCTTGTTGTGGGCTTGGGAATTTGAAGGCAGATGTTCCTTGTTTACCAATTGCAACATTTTGCTCAAATAGAAGCAACCATCTCTTTTGGGATCTCTATCATCCTACACAACAAGCCCATCAAATACCACCGGCTTCGTTCAGCCTCGAACCTCCGCCCACAGTCCGCCGTCCGTTCACCTTGCCGTCGACCCAGTCGCCACAGCCGTCACGTCCGCGCACCGCGTATAGATTTGACTTCAGACCGGTCTCACCGATCTCCGCCCCTTGCTCTCTCTCTAACTCGCTTTGTTCTCACTCTCAAGCTGCCGCCGCCACCTCCCCGTGTCGTTGCTGCCGTCTTCCACCCGATCGCCGTCGCTGGTTGTCGCTGTTGCTTGTTCTCTTAGTGGGTAAGAGTTTTTTTCTTTTTTTTGTGTCGTTGTGGCCGCCGTCGGAGTCTCAAGTCTGTCCTACTTTCCGGTTCAGGAAGATGGAATCCTCCGTGATAGCAGCTGAGCGCATTCTTTCGTATAATTTCAAGAACAAGAAGCTCTTAGAAGAAGCACTCACCCACTCCTCCTACTTCGACTCTGCCTCCTATGAGCGCCTCGAGTTTATCGGCGATTCAGCTATTGGCCTCGCTATTACCAATTATTTCTTTCTTACTTATCCAGACCTCCATCAAGGCCAACTATCTTTACTTAGGGCTGCTAACATTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCGCCATGGATTGTATAACTATGTTAGGCGCAACGCCGCCGCTCTCGATGACAAGGTTAGAGAGTTCGTCGATTCCGTCGCCCTAGAACATAACTCAGTTCCGTATGGTGGGTTGGTGAAGGCTCCTAAAGTTCTTGCTGACATTGTGGAATCTGTAGCTGGTGCTGTCTATGTAGATGTTAATTTTGATCTTCAAAGACTATGGGTGATAATTAGGGGTTTGTTAGAGCCTATCTATACTCTTGAAGACTTACAAGTAGAGCCCCAACCTGTAACCGTGCTCTTTGAAGTTTGCCAAAAAAATGGGAAGCAGGTAGATATCAAGAATTGGAAAAACGGTTCCAAGAACGTTGCAAGTGTTTATGTCGACGGTAGTTTTGTTGCTTCCAGCACTTCAATGCAAAAAGAAATTGCAAGGATTAATGCTGCCAGAGAAGCTCTCATTAAATTGTCGGATTTCATGGACACCAGAATTAGAACAGTTGTAACTATTGATGGTATCGATGAATCGTTTGAGATTGAAGGGGCAAAGCATAAGCTACATGATTTTTGTTGCAAGAAAAAGTGGCCGAAACCAAATTACAGTACTGAGAAAGATTTAGGACCTTCACATGAAAGGAGATTTGTTTGCTCTGTTAAGATTTCCACTTCTTCCGGTACGCTCTATATGATGGGAGATGAGAAGTCAAGAGTAAAGGATGCAGAGAATTCTGCAGCCTCTTTGATGATTCGTGCTTTACAGGAAAGAAACTATCTCTAA 2388 45.39 MVSHRPFTFSFFFLFFFPILFRVSNSSLVPAIYVFGDSLVDVGNNNHLKLSLAKANFPHNGLDFPTNKPTGRFSNGKNAADYIAEKVGLPTSPPYLSLISQFRKIINTTPFKTGVSFASGGAGIFNETNNLFKQSVAMDQQIVFYSTVYKNLVGELGSSGAAAHLSKSLFTVVIGSNDIFGYHQSSDLRNKYSPPQYLDLMASTLESQLKRLHGYGARKYVVGGIGLVGCAPSQRKRSKRGECDEEVNNWASTYNIALKSMLQRLKSELKDISFSYFDVYQVMSNFVRAPSSYGFTEIKSACCGLGNLKADVPCLPIATFCSNRSNHLFWDLYHPTQQAHQIPPASFSLEPPPTVRRPFTLPSTQSPQPSRPRTAYRFDFRPVSPISAPCSLSNSLCSHSQAAAATSPCRCCRLPPDRRRWLSLLLVLLVGKSFFLFFVSLWPPSESQVCPTFRFRKMESSVIAAERILSYNFKNKKLLEEALTHSSYFDSASYERLEFIGDSAIGLAITNYFFLTYPDLHQGQLSLLRAANISTEKLARVAVRHGLYNYVRRNAAALDDKVREFVDSVALEHNSVPYGGLVKAPKVLADIVESVAGAVYVDVNFDLQRLWVIIRGLLEPIYTLEDLQVEPQPVTVLFEVCQKNGKQVDIKNWKNGSKNVASVYVDGSFVASSTSMQKEIARINAAREALIKLSDFMDTRIRTVVTIDGIDESFEIEGAKHKLHDFCCKKKWPKPNYSTEKDLGPSHERRFVCSVKISTSSGTLYMMGDEKSRVKDAENSAASLMIRALQERNYL 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5998911 6011730 - CePI673135_10g005000.1 Cec10g0500 213415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0500 795 SUPERFAMILY RNase III domain-like 461 623 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cec10g0500 795 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 18 360 IPR051058 -
Cec10g0500 795 SMART riboneu5 477 627 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cec10g0500 795 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 632 695 IPR014720 -
Cec10g0500 795 Pfam Ribonuclease III domain 495 602 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cec10g0500 795 ProSiteProfiles Ribonuclease III family domain profile. 462 604 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cec10g0500 795 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 718 791 IPR014720 -
Cec10g0500 795 Pfam Double-stranded RNA binding motif 719 789 IPR014720 -
Cec10g0500 795 Pfam Double-stranded RNA binding motif 633 693 IPR014720 -
Cec10g0500 795 CDD RIBOc 477 627 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cec10g0500 795 SUPERFAMILY dsRNA-binding domain-like 718 793 - -
Cec10g0500 795 FunFam Endoribonuclease dicer-like 1 457 625 - -
Cec10g0500 795 Gene3D SGNH hydrolase 20 346 IPR036514 -
Cec10g0500 795 Pfam GDSL-like Lipase/Acylhydrolase 32 342 IPR001087 GO:0016788(InterPro)
Cec10g0500 795 Gene3D Ribonuclease III domain 453 624 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cec10g0500 795 Gene3D - 629 699 - -
Cec10g0500 795 SUPERFAMILY dsRNA-binding domain-like 586 693 - -
Cec10g0500 795 CDD SGNH_plant_lipase_like 30 342 IPR035669 -
Cec10g0500 795 Gene3D - 717 792 - -
Cec10g0500 795 SMART DRBM_3 719 790 IPR014720 -
Cec10g0500 795 SMART DRBM_3 633 694 IPR014720 -
Cec10g0500 795 SUPERFAMILY SGNH hydrolase 162 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0500 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1006 Cec-Chr8:21939904 Cec10g0500 Cec-Chr10:5998911 1.20E-30 dispersed
Cec10g0500 Cec-Chr10:5998911 Cec11g0875 Cec-Chr11:11321048 1.20E-57 dispersed
Cec10g0500 Cec-Chr10:5998911 Cec10g0503 Cec-Chr10:6045803 2.20E-99 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42