Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0504 ATGGCCAACAAATTGGGACCTCCTTCTTCTATCCTTTCCTTTCTCCTCTTCCTCACTTTGATCATCGGAACGAGTTTAGCGCCTCGTAATCTCAACGACAATGTGTTAGAATGGGTGAAGAAGGACCATCGTCGTTTTCTCCGTGCTGTTATTTACGTCTCCAATCTAGACCGTTCTGTTAGGTTTTACACGCAAGGCTTTGGAATGAAACTTTTGAAAAGAAGGAACTTCCCAGATCGTCAATACAGAGACGCCCTCATTGGGTTTGGGCCTCAAAATACTCACTTTTTGTTAGAACTAAGACATCGACATGATTCGAATGATGTATTTATTGGGACAGAGTTTGGACATTTTGGGATTGCCACTCAAGATGTCTACAAATCTGTGGAGAAAGCTCGAGCAAATGGTGCATTGGTGATCCACAAGCCCCAAAAAGTTAACCAAACCATCGTTGCCTTTGTGCAAGATCGTGATGGCTATAAGTTTAAGCTCATTCAAAGGACTTCTTTAACTGATCCTCTTGTTCAAATCATGCTTCATGTACAAGATTTGAATCGTTCCCTCAACTTCTATACAAAGGCATTCGGAATGAAGTTGTTTGAGAGGCAAAACAATTCAACAGGACAGATTGTTTCGGGGACTTTGGGTTATGGAATAAACCAAAGTAAAACAACAGTCTTGCAATTGGAGAAAAGAAAAAACATCCCTCGTGATGATGGACGAGATGGCTATTCAATGGTGTATATTGGTACCGACAACGTAAACAAGAGTGCTGAAGCTGCTAAGTTGGTAATGAAAGAGCTTGGTGGTAACATAGTAATCGAGCCGGTTCTTTTGTCCAATATCAATGTCAAATTATGGTTGACAATAAAGATTATCAAAGAGGAACACTATATAGAAAAACAAGAATGTGAAAAGGCTCAAATTCAGAGGATTATGTACATTAATTTCTAG 954 39.73 MANKLGPPSSILSFLLFLTLIIGTSLAPRNLNDNVLEWVKKDHRRFLRAVIYVSNLDRSVRFYTQGFGMKLLKRRNFPDRQYRDALIGFGPQNTHFLLELRHRHDSNDVFIGTEFGHFGIATQDVYKSVEKARANGALVIHKPQKVNQTIVAFVQDRDGYKFKLIQRTSLTDPLVQIMLHVQDLNRSLNFYTKAFGMKLFERQNNSTGQIVSGTLGYGINQSKTTVLQLEKRKNIPRDDGRDGYSMVYIGTDNVNKSAEAAKLVMKELGGNIVIEPVLLSNINVKLWLTIKIIKEEHYIEKQECEKAQIQRIMYINF 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6058328 6070146 + CePI673135_10g005040.1 Cec10g0504 213419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0504 317 Gene3D - 170 291 IPR029068 -
Cec10g0504 317 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 175 277 IPR029068 -
Cec10g0504 317 ProSitePatterns Glyoxalase I signature 1. 176 197 IPR018146 GO:0004462(InterPro)|GO:0046872(InterPro)
Cec10g0504 317 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 47 163 IPR004360 -
Cec10g0504 317 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 175 261 IPR004360 -
Cec10g0504 317 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 173 304 IPR037523 -
Cec10g0504 317 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 45 167 IPR037523 -
Cec10g0504 317 PANTHER LACTOYLGLUTATHIONE LYASE 32 286 - GO:0004462(PANTHER)|GO:0005737(PANTHER)|GO:0019243(PANTHER)
Cec10g0504 317 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 45 168 IPR029068 -
Cec10g0504 317 Gene3D - 22 169 IPR029068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0504 K01759 - - csv:101203268 491.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0968 Cec-Chr6:13621187 Cec10g0504 Cec-Chr10:6058328 1.10E-59 dispersed
Cec10g0504 Cec-Chr10:6058328 Cec11g0239 Cec-Chr11:2563355 3.20E-57 dispersed
Cec10g0501 Cec-Chr10:6023153 Cec10g0504 Cec-Chr10:6058328 5.60E-115 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36