Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0515 ATGACCCACTTTATCGAACCCAAATTCCACCAAACCCCATTTCCCCTTCTACGCCGCACTCCCAAATCTCCACCGCCCATCTCAATCCGATGCGGCAGTGCCACCCGCGCGCTCCGATCCCGACTAGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAACTCGTCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTCCATTTCATCATCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTATAAACCCTAGACCCGTCAGGAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGCGGGGGCTTCAACGCTTCGGTAATAAAAAAAGCTGAGACCCGATTGACCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAATTCGCATTTCCGCCGCCGGTCCGATGTTGAAGTCGATCGGTTCATCACCGGCTGCGGCGGCGTTTCAGTACCCACTGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATTAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCCGTGCCTGTGATTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAGGTGGAGAGAGAGGGAAAAAGGGGGAAATTAGGTGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAAGTAGCGGCGAGGATGAATGCAATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATCGTTGCTGGAGCTGAGGCTCTCGAGGGATTTTGA 1053 50.33 MTHFIEPKFHQTPFPLLRRTPKSPPPISIRCGSATRALRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFIIQQIQRDDIDFPFINPRPVRKVAVVVFTGDRGLCGGFNASVIKKAETRLTELKNLDLGHTLISVGKKGNSHFRRRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSVPVIETLLPLLGEGEAMGDGGFRLTTAEGKLKVEREGKRGKLGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESMASEVAARMNAMSNASENAMELKKSVSVAYNRERQAKITGEILEIVAGAEALEGF 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6215625 6216677 - CePI673135_10g005150.1 Cec10g0515 213430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0515 350 CDD F1-ATPase_gamma 35 344 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec10g0515 350 FunFam ATP synthase gamma chain, chloroplastic 33 100 - -
Cec10g0515 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec10g0515 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec10g0515 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec10g0515 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec10g0515 350 ProSitePatterns ATP synthase gamma subunit signature. 333 346 IPR023632 -
Cec10g0515 350 FunFam ATP synthase gamma chain 99 228 - -
Cec10g0515 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 347 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec10g0515 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec10g0515 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 245 347 - -
Cec10g0515 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 102 - -
Cec10g0515 350 PANTHER ATP SYNTHASE GAMMA CHAIN 29 347 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cec10g0515 350 FunFam ATP synthase gamma chain, chloroplastic 244 347 - -
Cec10g0515 350 NCBIfam ATP synthase F1 subunit gamma 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec10g0515 350 Gene3D - 103 228 - -
Cec10g0515 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1726 Cec-Chr1:31847361 Cec10g0515 Cec-Chr10:6215625 9.10E-28 transposed
Cec10g0515 Cec-Chr10:6215625 Cec03g0453 Cec-Chr3:4882297 7.20E-103 wgd
Cec10g0515 Cec-Chr10:6215625 Cec04g1906 Cec-Chr4:37502334 5.20E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0515 K02115 - csv:101214682 609.757