Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0538 ATGGCGCTAAAACCAGAGGCAGAAAATAAACCTGACTCTGTCTTCTTCTTCTTCCTCCTCCTCTCTTTTATAACAATCTTCCCCTTTTCTCATTTCCGGTTTTCCCAAAAGCCCCACCCATTCCCCCCACCCCTTCCTCCGCCGCGTCCTCGCGCGGCGCCGCTTCCTTCACCTTCCTTCTTCAACTTTCCAAACCCACAATCCAACAAACAAACAAACAAACAAACCCATTTCACTCTCTTCTATTCTCCTAAAAAGCTAAACATATCTCAATACCCATTTTTAATTTCTCTCTGTTTTTCATATCCTTATCCTTCCGGCATGCAATTTCCAACGCGAGTTTTGATCTCTGTTTCTTTCCTTATTTCCCTTCTTGTTTTTTCTAATTTTTCTTTCTGTTCTGCACAAGACTATATAATTGGCGGCGGCGGCGGCGGCGGCGGCGACGACGACGACGAGGCGAAGCCAGCGGCGCCACCGCCGGAGCAGAATAACTGTAATGGGATATTCTTGTCCTATACATTTATTTCGCGTGAGAAGGAGCTGCCACGGCTGAAGAACGCGACGGCTCAGTCATGGGCATTCAAGTCGGAGGCGTTGATTCTGAATGCGGGATCGACGGAGCTGAAGGCGTGGAAGATGTTCATCGGATTTCACCACCGGGAAATCCTGGTGTCGGCGGCTGGCGCGGTGGTGATGGATGGGTCGGATTTCCCTGTGGACGTTGGGAATGGAACCACTTTGGCTGGGTACCCCATGACGGATCTGAAAACGTCGATTGAAACCGCGGGAGATATTAATCAGATTCAGGCGACGGTGGAGCTGACCGGAACGCAGTTCGGAATCAAGCCGCCTGGTGTTCCGATGCCAAAGACGATTCGCCTTGCTAACGATGGATTTAAGTGCCCTGCGCCTCGCCGTCGCGGGAAGAGAACAATGCATGTATGCTGCAAAAAGGATCCGAAGTTCAAGGTGAAAGCACCAAAGAAAACCAGATTTTTCCCTCGCCAAAATGGAGATCTCTCACTCACTTATGATATTATGCAAGCTTATGGAAATAACTATCTTGCTCAAGTCACAATCGACAACAACAATCCTCTAGGACGTCTTGATCACTGGAACTTAACTTGGGAATGGATGAGAGGAGAGTTCATTCAAAGCATGAGAGGAGCTTATACTCATACAAGAGATTTATCTCAATGCATTTATGGTCCTGCAGGCCAATACTATCAAGATTTTGACTTCTCTCAAGCCATGAGTTGCGATAAAAGGCCGGTCATTGCCGATCTTCCAGCCGATCGAAAAGACGACGATAAGGTTGGGAAGTTGCCGTATTGCTGTAGGAATGGAAGTTTGTTGCCAACATTGATGGATGAGAGCAAAGCAAGGTCTATTTTTCAATTACAAGTCTATAAGCTTCCCCCTGATATGAACCGAACAGCTCTTAATCCACCGCAGAAATGGAAGATCTCGGGCATTCTAAACCCGAAATACGTTTGTGCAGCTCCACTCCGAGTTGAACCGACGGAGTTTCCTGACCCTAGTGGACTTCAGGCAACGAGTACCGCGATTGCAAGTTGGCAAATTGTTTGCAACATTACAAGGCCAAAGGTGAAGCAATCAAAATGCTGTGTTTCATTTTCAGCATATTATAATGACTCTGTAATTCCTTGCAATACTTGTGCCTGTGGTTGTGACAACACTGATACTGATACTTGCAATCCAAATGCACATGCAATGCTGCTCCCTCCAGAAGCACTTTTGGTTCCATTTGTTAACAGGACAGCAAAAGCAAGAGCTTGGGCTAAAATTAAGCATTACCCAAATCCAAAGAAGATGCCTTGTCCTGATAACTGTGGAGTTAGCCTCAATTGGCATATTAACTCTGATTATACCAATGGATGGACTGCAAGATTAACACTTTTCAATTGGGAAGATTATCCATTTGAGGATTGGTTTACTGCTATTCAGTTGAACAAGGCCGGTCGCGGTTACGAAAACGTTTATTCTTTCAACGGAACCCGGCTTCCCAACATAAAAAACACCATCTTCCTCCAAGGTTTGCCTGGTTTAACATACTTGATGGGAGAGGTAAATGGGACCAATCCTAGATCTGATCCAAGAGTTCCAGGGAAGCAACAATCTGTCATTTCTTTCACCAAGAAAGGCCTGCGCGACATCGACATACTAGGAGGCAACGGTTTTCCAATCAAAGTGTTTTTCAATGGCGAAGAATGTGCGCTTCCAAAGGAAATTCCCACAGCAAGTTCAGGCCACCACTCTCGCCACGGTTTCATGCTACTCATCTTCATCTTAGCTCTTACTTTTGCGTTTATAACCGATCGCTTCCATTGA 2355 46.03 MALKPEAENKPDSVFFFFLLLSFITIFPFSHFRFSQKPHPFPPPLPPPRPRAAPLPSPSFFNFPNPQSNKQTNKQTHFTLFYSPKKLNISQYPFLISLCFSYPYPSGMQFPTRVLISVSFLISLLVFSNFSFCSAQDYIIGGGGGGGGDDDDEAKPAAPPPEQNNCNGIFLSYTFISREKELPRLKNATAQSWAFKSEALILNAGSTELKAWKMFIGFHHREILVSAAGAVVMDGSDFPVDVGNGTTLAGYPMTDLKTSIETAGDINQIQATVELTGTQFGIKPPGVPMPKTIRLANDGFKCPAPRRRGKRTMHVCCKKDPKFKVKAPKKTRFFPRQNGDLSLTYDIMQAYGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLSQCIYGPAGQYYQDFDFSQAMSCDKRPVIADLPADRKDDDKVGKLPYCCRNGSLLPTLMDESKARSIFQLQVYKLPPDMNRTALNPPQKWKISGILNPKYVCAAPLRVEPTEFPDPSGLQATSTAIASWQIVCNITRPKVKQSKCCVSFSAYYNDSVIPCNTCACGCDNTDTDTCNPNAHAMLLPPEALLVPFVNRTAKARAWAKIKHYPNPKKMPCPDNCGVSLNWHINSDYTNGWTARLTLFNWEDYPFEDWFTAIQLNKAGRGYENVYSFNGTRLPNIKNTIFLQGLPGLTYLMGEVNGTNPRSDPRVPGKQQSVISFTKKGLRDIDILGGNGFPIKVFFNGEECALPKEIPTASSGHHSRHGFMLLIFILALTFAFITDRFH 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6523575 6527589 - CePI673135_10g005380.1 Cec10g0538 213453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0538 784 PANTHER COBRA-LIKE PROTEIN 7 118 779 - -
Cec10g0538 784 Pfam COBRA-like protein 355 534 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cec10g0538 784 MobiDBLite consensus disorder prediction 144 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0538 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1711 Cec-Chr7:32656333 Cec10g0538 Cec-Chr10:6523575 1.70E-27 dispersed
Cec05g0753 Cec-Chr5:6214228 Cec10g0538 Cec-Chr10:6523575 1.50E-215 transposed
Cec05g1640 Cec-Chr5:26338004 Cec10g0538 Cec-Chr10:6523575 2.40E-28 transposed
Cec10g0538 Cec-Chr10:6523575 Cec05g1639 Cec-Chr5:26333362 9.30E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g458 . . . . Bpe09g00187 Bpe08g01136 . Bma13g01035 Cmo16g00909 Cmo04g01012 . . . . Sed07g1929 . . Bhi09g01934 Tan01g4517 Cmetu06g0182 . Hepe01g1303 . . Cla10g00527 Cam10g0521 Cec10g0538 Cco10g0528 Clacu10g0543 Cmu10g1369 Cre10g0772 Cone6ag0084 . Cone14ag1126 . Lsi04g01234 Csa03g00533 . Cme06g02279 . Blo10g00811 . Bda12g00896 . . Bma07g01310 . . . . Cma04g00942 Cma16g00850 Car04g00880 Car16g00854 . Cpe01g00854 . . . . . . . Cla05g01523 Cam05g1636 Cec05g1640 Cco05g1673 Clacu05g1626 Cmu05g1523 . Lsi05g00621 . Chy06g01797 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1750 . 48 447 COBRA Gene Family AT5G60920 80.3 1.8e-209 725.3
Cec07g1711 . 44 450 COBRA Gene Family AT5G60920 75.2 7.4e-200 693.3
Cec07g1712 . 31 426 COBRA Gene Family AT5G60920 68.2 1.1e-179 626.3
Cec06g1749 . 55 432 COBRA Gene Family AT5G60920 71.2 5.5e-179 624.0
Cec01g1708 . 37 427 COBRA Gene Family AT5G60920 59.2 3.3e-147 518.5
Cec05g1122 . 31 425 COBRA Gene Family AT5G60920 54.1 2.8e-130 462.2
Cec06g1750 . 22 451 COBRA Gene Family AT3G02210 74.2 5.0e-205 710.7
Cec07g1711 . 19 448 COBRA Gene Family AT3G02210 74.0 4.6e-203 704.1
Cec06g1749 . 27 453 COBRA Gene Family AT3G02210 66.2 1.2e-179 626.3
Cec07g1712 . 5 429 COBRA Gene Family AT3G02210 66.6 1.6e-179 625.9
Cec01g1708 . 11 423 COBRA Gene Family AT3G02210 57.6 1.3e-149 526.6
Cec05g1122 . 1 420 COBRA Gene Family AT3G02210 55.4 1.9e-140 496.1
Cec06g1750 . 21 446 COBRA Gene Family AT3G29810 75.0 3.8e-202 701.0
Cec07g1711 . 29 448 COBRA Gene Family AT3G29810 72.4 1.3e-194 676.0
Cec07g1712 . 14 428 COBRA Gene Family AT3G29810 66.3 1.6e-176 615.9
Cec06g1749 . 38 436 COBRA Gene Family AT3G29810 66.9 1.5e-174 609.4
Cec01g1708 . 24 428 COBRA Gene Family AT3G29810 57.7 6.0e-147 517.7
Cec05g1122 . 13 430 COBRA Gene Family AT3G29810 55.1 1.4e-140 496.5
Cec06g1749 . 32 363 COBRA Gene Family AT5G15630 83.4 3.0e-178 621.3
Cec07g1712 . 9 339 COBRA Gene Family AT5G15630 82.5 2.1e-176 615.1
Cec06g1750 . 31 361 COBRA Gene Family AT5G15630 73.2 1.5e-150 529.3
Cec07g1711 . 29 358 COBRA Gene Family AT5G15630 69.1 1.1e-145 513.1
Cec01g1708 . 15 334 COBRA Gene Family AT5G15630 60.2 4.8e-128 454.5
Cec05g1122 . 19 341 COBRA Gene Family AT5G15630 50.9 5.2e-98 354.8
Cec06g1750 . 19 224 COBRA Gene Family AT5G60950 57.5 3.0e-64 241.9
Cec07g1711 . 27 220 COBRA Gene Family AT5G60950 59.5 1.1e-63 240.0
Cec07g1712 . 27 207 COBRA Gene Family AT5G60950 57.5 1.4e-58 223.0
Cec06g1749 . 51 231 COBRA Gene Family AT5G60950 58.0 2.4e-58 222.2
Cec05g1122 . 12 413 COBRA Gene Family AT1G09790 60.2 4.0e-151 531.6
Cec07g1711 . 25 428 COBRA Gene Family AT1G09790 54.0 2.0e-134 476.1
Cec06g1749 . 41 434 COBRA Gene Family AT1G09790 53.7 2.9e-133 472.2
Cec06g1750 . 32 432 COBRA Gene Family AT1G09790 53.3 7.2e-132 467.6
Cec07g1712 . 3 410 COBRA Gene Family AT1G09790 51.1 5.7e-129 458.0
Cec05g0753 . 34 621 COBRA Gene Family AT4G16120 64.4 1.1e-242 836.3
Cec10g0538 . 166 774 COBRA Gene Family AT4G16120 54.2 4.3e-205 711.4
Cec05g1639 . 1 363 COBRA Gene Family AT4G16120 56.6 4.4e-125 445.7
Cec05g0753 . 11 627 COBRA Gene Family AT3G16860 61.7 6.2e-233 803.9
Cec10g0538 . 166 763 COBRA Gene Family AT3G16860 52.8 2.6e-194 675.6
Cec05g1639 . 1 348 COBRA Gene Family AT3G16860 55.1 7.4e-117 418.3
Cec05g0753 . 7 617 COBRA Gene Family AT5G49270 59.0 4.2e-229 791.2
Cec10g0538 . 166 761 COBRA Gene Family AT5G49270 52.2 1.9e-197 686.0
Cec05g1639 . 1 343 COBRA Gene Family AT5G49270 54.6 1.5e-117 420.6
Cec10g0538 . 106 781 COBRA Gene Family AT3G20580 59.4 9.8e-250 859.8
Cec05g0753 . 27 605 COBRA Gene Family AT3G20580 53.9 2.1e-199 692.6
Cec05g1639 . 1 363 COBRA Gene Family AT3G20580 64.1 3.4e-149 525.8
Cec10g0538 . 166 782 COBRA Gene Family AT4G27110 63.3 4.0e-243 837.8
Cec05g0753 . 24 623 COBRA Gene Family AT4G27110 51.0 1.2e-191 666.8
Cec05g1639 . 2 354 COBRA Gene Family AT4G27110 65.1 5.2e-142 501.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55