Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0552 ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTTCCGAGGCCAATTTCTCTCCACCCACTACCGGCTTTTCCTGGTCTATGACTCCCCTCAACGGCTCCGCCAATGTCAGCACGGAAATTGAAGGATCACTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCGAAAGCCTGTAGGGAAAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTCGAATTGGGCGCTATTCTGGAGCCAGGTAGACCACCTAAGACCGACAAGGCTGCCATTTTGATCGATGCTGTTCGGATGGTCACTCAGTTACGTGGTGAAGCCCAGATGTTGAAGGATTCAAATACAATTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAAGAGAAGTTGGAACAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATTGGCTACCCCGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCACAAGATCACGTACTCCGACCTCCTGTTGCTTAA 705 48.23 MVSPETTNWLFDYALMDDIPVSEANFSPPTTGFSWSMTPLNGSANVSTEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQMLKDSNTILSEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6727668 6730983 + CePI673135_10g005520.1 Cec10g0552 213467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0552 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cec10g0552 234 Coils Coil 130 178 - -
Cec10g0552 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 151 IPR036638 GO:0046983(InterPro)
Cec10g0552 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cec10g0552 234 PANTHER BHLH TRANSCRIPTION FACTOR 7 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cec10g0552 234 CDD bHLH_AtILR3_like 83 155 - -
Cec10g0552 234 FunFam Transcription factor bHLH34 66 124 - -
Cec10g0552 234 Gene3D - 78 151 IPR036638 GO:0046983(InterPro)
Cec10g0552 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0867 Cec-Chr2:10780595 Cec10g0552 Cec-Chr10:6727668 1.10E-59 dispersed
Cec05g0505 Cec-Chr5:4045552 Cec10g0552 Cec-Chr10:6727668 1.20E-27 dispersed
Cec06g1823 Cec-Chr6:31664546 Cec10g0552 Cec-Chr10:6727668 5.80E-06 transposed
Cec10g0552 Cec-Chr10:6727668 Cec03g0495 Cec-Chr3:5212254 2.30E-57 wgd
Cec10g0552 Cec-Chr10:6727668 Cec05g1652 Cec-Chr5:27116955 2.30E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30348 PF00010 HLH 1.10E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0552 - - - 0.0