Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0606 ATGGAGGACGACATGATAGAAGAAGTCCAACAGTTGAAAGAAGAAGTGAGGAAGATGCTAGTTGCTGTGGTTGAAAACCCTATAGATAAGCTAAAGTTGGTTGATTCAATCCAAAACTTAGGTGTTTTTTACCATTTTGAAAAGGAGATTGATCAAGTTTTGGAAGAAATGTATGTGGCGTTTAAGAGTTCATTGAATAATCAAAGTAGCGATGAAGATCTTAATACCGTTGCTCTTCTATTTCGTCTACTCAGACAACAAGGTTATAAAATTCCATGTGATATATTCTCAAAGTTTGTGGAAGACAATGGAAAATTCAAAGAAACATTAAGGAGTGATGCAAGAGGAATTTTGAGTTTATATGAAGCAACACACATGAGGGTTCATGGAGAAGACTTGCTTGAAGAAGCACTTGATTTTTCAACCAAACATCTTAAACAAATTTTAGAAAACTCAAGCTCTCCTTTCACCACCGAAATTAGCAATGCTTTAAAATTGCCAATAAGAAGGGCTCTCCCAAGAGTAAAAGCAAGAGTGTATATTGAAATCTTTCAACAAGATCCTTCACATAATGATGCATTGCTTGCCTTCTCAAAATTAGATTTCAACGTACTACAAAAGCTTCATCAAATTGAGTTGAAGGAAATCACAAGGTGGTGGAAGGATTTGAACGTCCCAAAGAACTTTCCATTTGCAAAAGATCGAATTGTGGAGTGTTATTTTTGGATATTGGGTGTATATTTTGAACCTCAATTCAAGATTGGGAGGATAATATTTACCAAATTGCTTGGCGTGTTCTCAATTTTGGATGATATATATGATGCTTATGGAACATTTGAAGAACTCCAACTTTACACTTTAGCAATCAAAAGATGGGACATAAGCATGATTAATCAACTCCCGGAGTATATGAAAGTTCATTATATAACCCTGCTTGGTCTTTACGAAGAGATGGACAAAGAGATGGCGAAGGATGGAACATCATATCGTGCTCACTTTGCAAAAGAAGCAGTGATAAGCCTAGCCGAATCATATTTGAAAGAAGCTGAATGGCTAAACAAAAAGTACAAACCAAAATTTGAAGAATACATGGAAGTGGCTTTAGATAGCGCAGCTTATGCACTACTTTCAACTATTTCATTTGTTTGCATGGGAGATATTGCAACAAAAGAGGTTTTTGATTGGCTTTCAGACAAACCCAAAATTCTTAAGGCTTCGTGCATCATTTGTAGACTCATGGACGATATTGTCTCCTCCAAGTTTGAGCAAGAAAGAGAACATGTTCTTTCCGCGGCTGAATGTTACATGGACAATTATGGCTGCTCAGAAGGAGAAACATATGCTGAATTTCGAAAGCAATTAGAAGATGCATGGAAGAATATCAATGAAAGTTGCCTCCGTCCAATGACTGTTCCAATGCCATTTTTATTGCGTGTATTAAATCTTAGCAGAGTTATAGCCCTACTTTATTGTGATGAGGATGGATACACAAATTCCAAGGGTAGGACTAAACTTCTTATCCAGTCTATACTTGTTGACCCAGTGTGTTTTTGA 1554 36.42 MEDDMIEEVQQLKEEVRKMLVAVVENPIDKLKLVDSIQNLGVFYHFEKEIDQVLEEMYVAFKSSLNNQSSDEDLNTVALLFRLLRQQGYKIPCDIFSKFVEDNGKFKETLRSDARGILSLYEATHMRVHGEDLLEEALDFSTKHLKQILENSSSPFTTEISNALKLPIRRALPRVKARVYIEIFQQDPSHNDALLAFSKLDFNVLQKLHQIELKEITRWWKDLNVPKNFPFAKDRIVECYFWILGVYFEPQFKIGRIIFTKLLGVFSILDDIYDAYGTFEELQLYTLAIKRWDISMINQLPEYMKVHYITLLGLYEEMDKEMAKDGTSYRAHFAKEAVISLAESYLKEAEWLNKKYKPKFEEYMEVALDSAAYALLSTISFVCMGDIATKEVFDWLSDKPKILKASCIICRLMDDIVSSKFEQEREHVLSAAECYMDNYGCSEGETYAEFRKQLEDAWKNINESCLRPMTVPMPFLLRVLNLSRVIALLYCDEDGYTNSKGRTKLLIQSILVDPVCF 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8039025 8044338 - CePI673135_10g006060.1 Cec10g0606 213521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0606 517 FunFam Isoprene synthase, chloroplastic 25 190 - -
Cec10g0606 517 Pfam Terpene synthase, N-terminal domain 3 164 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Cec10g0606 517 Coils Coil 2 22 - -
Cec10g0606 517 FunFam Isoprene synthase, chloroplastic 156 505 - -
Cec10g0606 517 SFLD Isoprenoid Synthase Type I 190 515 - -
Cec10g0606 517 Pfam Terpene synthase family, metal binding domain 221 459 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cec10g0606 517 SUPERFAMILY Terpenoid synthases 190 515 IPR008949 -
Cec10g0606 517 Gene3D - 25 190 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cec10g0606 517 CDD Terpene_cyclase_plant_C1 2 514 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Cec10g0606 517 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 2 190 IPR008930 -
Cec10g0606 517 PANTHER OS04G0344100 PROTEIN-RELATED 6 496 - -
Cec10g0606 517 Gene3D Farnesyl Diphosphate Synthase 3 504 IPR008949 -
Cec10g0606 517 SFLD Terpene Cyclase Like 1 C Terminal Domain 190 515 IPR034741 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0606 K15803 - - csv:101211697 731.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0509 Cec-Chr3:5333926 Cec10g0606 Cec-Chr10:8039025 1.80E-65 dispersed
Cec03g0510 Cec-Chr3:5358063 Cec10g0606 Cec-Chr10:8039025 3.10E-53 dispersed
Cec10g0377 Cec-Chr10:4519055 Cec10g0606 Cec-Chr10:8039025 2.10E-96 dispersed
Cec10g0378 Cec-Chr10:4538929 Cec10g0606 Cec-Chr10:8039025 6.30E-127 dispersed
Cec10g0606 Cec-Chr10:8039025 Cec02g0096 Cec-Chr2:947478 1.20E-10 dispersed
Cec10g0603 Cec-Chr10:7983501 Cec10g0606 Cec-Chr10:8039025 1.30E-51 proximal
Cec10g0606 Cec-Chr10:8039025 Cec10g0608 Cec-Chr10:8092666 1.80E-126 proximal
Cec10g0605 Cec-Chr10:7996235 Cec10g0606 Cec-Chr10:8039025 9.10E-25 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g397 Blo03g00606 . . . . . . Bma13g00965 . . . . . . . . . . . . . . . . Cla10g00588 Cam10g0575 Cec10g0606 Cco10g0582 Clacu10g0607 Cmu10g1420 Cre10g0821 . . . . . Csa03g00576 . Cme06g02687 . . . . . . . . . . . . Cma16g00825 . . Cpe14g00717 . Bhi11g00694 Tan01g1630 . . Hepe07g1116 . . . . . . . . . Lsi05g00661 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337