Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0608 ATGTGTTCTAAAGTATCAGTAGTTCAAAGCTCTTTGGATGTGGCTCGAAGGTCTGCCCAATTTCAAGCTAGTGTTTGGGGAGATTACTTTCTTTCCTATCAATCTCTTCCTCCGGAACAAGCCAACAAGTCGACGGAGAAACAGATGGAAGAATTGAAAGAAGAAATAAAAAGTCAGTTACTGATTACTACAACAAAAGATAACATTGAGAAATTAAGACTCATCAATTCAATTCAACGCTTAGGCGTTTCTTACCATTTCGAAACTGAGATCCACAGAGTTCTTCAACAACTTTATCATAATATTGCTCAACATGATAATGACCTTCACACTATGACTCTCCGATTCAGACTTCTTAGGCAACAAGGCTACAACATATCATCTCAGCCGTTCGATAAGTTTCGAGGCAAATGGAGAAGTTCATATAATAACAATAATGTAGAAGAACTCTTGAATTTATACGAAGCATCGCAATTGAGGATGCAAGGAGAGGAAGCATTGGACGAAGCATTTCGTTTTGCTACCGCTCAGTTGGAAGCCATTGTCGGAGACTCTGCCACCGATACAACGGTTGCAGCGGAAGTTCGCCGTGCTTTGAAGTGGCCGCTGTACAAGAATCTGCCAAGGCTTGATGCCAGACACTACATTGATTTGTTCAGCGAGAAGCCATGGAGGAATGAGAGTTTGCTTAACTTTGCAAAGATGGATTTCAACCAATTGCAAAAACTTCATCAGAAAGAGATTGCTTACATCTCAAAGTGGTGGGAAGATTATGGATTTGCAGAAAAGCTATCATTTGCAAGGAATAGGATTGTGGAGGGATATTTTTTTGCTCTTGGGATATTCTTTAAACCTCAATTTTTAAGTGCCAGACTTATTATGATCAAAATCATTGCTATTGGGTCAATGTTAGATGACATTTATGATGTTTATGGCACATTTGAAGAACTCAAACTCTTGACCCTTGCACTTGAGAGATGGGACAAGAGTGAGACCGACCAACTCCCAAATTATATGAAGATGTACTACGAGGCTTTGTTGGATGTTTTCGAAGAAATTGAAGAAGAAATGAGGCAGCAGAAAACAACACCATATTGCATCCATCACATGAAAGAAGCGACAAAAGAGCTAGGAAGGGTATTTTTGGTAGAGGTAAAATGGTGTAAGGAAGGATACACACCAACTATGGAAGAATACTTGGATATTGCTTTGACATCTTTTGGCCACAAATTGCTTATGGTAACAGCCCTTTTGGGAATGGGAGATTTGGCCACACAACATGCTGTTCAATGGCTCATCTCCATGCCTAATATTCTCAAGGCCTCCACTGTTATTTGTAGGCTCATGAACGACATCGTTTCGCATAAGTTTGAACAAGAACGAGGTCATGTGGCTTCTGCAATTGAATGCTACATGGAACAGAATCGTGCGTTGGAATACGATGCCCTAAATGCATTACACAAACAAATTGATGATTCGTGGAAGGATATGGTTGAGAATTTTTGTGTTATCACCACAGAAAATCAGATTCCAAGGGCTGTTCTTATGAGAGTTTTGAACCTCACAAGATTATTTAATGTGATTTACAAAGATGGAGATGGGTATACGCAATCTCAAGGCTCCACAAAAACTCATATAAAATCTTTGCTTGTAGACTCTGTCCCACTAAGGCTTTTTAATACATACATAAAATGA 1695 39.35 MCSKVSVVQSSLDVARRSAQFQASVWGDYFLSYQSLPPEQANKSTEKQMEELKEEIKSQLLITTTKDNIEKLRLINSIQRLGVSYHFETEIHRVLQQLYHNIAQHDNDLHTMTLRFRLLRQQGYNISSQPFDKFRGKWRSSYNNNNVEELLNLYEASQLRMQGEEALDEAFRFATAQLEAIVGDSATDTTVAAEVRRALKWPLYKNLPRLDARHYIDLFSEKPWRNESLLNFAKMDFNQLQKLHQKEIAYISKWWEDYGFAEKLSFARNRIVEGYFFALGIFFKPQFLSARLIMIKIIAIGSMLDDIYDVYGTFEELKLLTLALERWDKSETDQLPNYMKMYYEALLDVFEEIEEEMRQQKTTPYCIHHMKEATKELGRVFLVEVKWCKEGYTPTMEEYLDIALTSFGHKLLMVTALLGMGDLATQHAVQWLISMPNILKASTVICRLMNDIVSHKFEQERGHVASAIECYMEQNRALEYDALNALHKQIDDSWKDMVENFCVITTENQIPRAVLMRVLNLTRLFNVIYKDGDGYTQSQGSTKTHIKSLLVDSVPLRLFNTYIK 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8092666 8100408 + CePI673135_10g006080.1 Cec10g0608 213523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0608 564 Coils Coil 42 62 - -
Cec10g0608 564 Gene3D - 66 225 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cec10g0608 564 Pfam Terpene synthase family, metal binding domain 257 496 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cec10g0608 564 CDD Terpene_cyclase_plant_C1 16 552 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Cec10g0608 564 Gene3D Farnesyl Diphosphate Synthase 24 544 IPR008949 -
Cec10g0608 564 Pfam Terpene synthase, N-terminal domain 25 199 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Cec10g0608 564 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 222 IPR008930 -
Cec10g0608 564 SUPERFAMILY Terpenoid synthases 225 556 IPR008949 -
Cec10g0608 564 SFLD Terpene Cyclase Like 1 C Terminal Domain 226 554 IPR034741 -
Cec10g0608 564 PANTHER OS04G0344100 PROTEIN-RELATED 22 535 - -
Cec10g0608 564 FunFam Isoprene synthase, chloroplastic 216 544 - -
Cec10g0608 564 Coils Coil 343 363 - -
Cec10g0608 564 SFLD Isoprenoid Synthase Type I 226 554 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0608 K15803 - - csv:101211540 891.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0094 Cec-Chr2:923811 Cec10g0608 Cec-Chr10:8092666 3.10E-90 dispersed
Cec02g0097 Cec-Chr2:949681 Cec10g0608 Cec-Chr10:8092666 1.50E-37 dispersed
Cec09g2388 Cec-Chr9:40636758 Cec10g0608 Cec-Chr10:8092666 1.20E-35 dispersed
Cec10g0603 Cec-Chr10:7983501 Cec10g0608 Cec-Chr10:8092666 4.90E-40 dispersed
Cec10g0605 Cec-Chr10:7996235 Cec10g0608 Cec-Chr10:8092666 8.00E-21 dispersed
Cec10g0608 Cec-Chr10:8092666 Cec02g0096 Cec-Chr2:947478 4.80E-08 dispersed
Cec10g0606 Cec-Chr10:8039025 Cec10g0608 Cec-Chr10:8092666 1.80E-126 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013849 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 2 3 1 1 2 1 0 2 0 25