Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0657 ATGGATCGGGTGCTAAAGGCCGCAAGAGCATCCGTCTATCGGAGCTTGGATGCAGTTCAGGCAGACGAGAAGTGGTGGGAGGCTGTGGAGCTACAGAAGCTAATTCTAGCTCATAATAATATTCAATTGTTGAGTGAAGAACTGAGGAATTTGTCTTCTCTTACTGTATTAAATGTTAGTCACAACAAACTTTTTGAACTACCAGCTGCAATTGGAGAGCTTCCTGCCCTAAAGCTCTTAGATGTGTCCTTCAATTCGTTAATGAGAATACCTGAGGAAATTGGATCCGCCACTTCACTTGTCAAATTTGACTGTTCAAGCAATCACCTTAAGGAACTACCAGGTGGACTTGGAAGGTGTTCAGATCTGTCAGATCTGAAGGCATCAAACAACTCCATTTCCAGCTTGCCCGATGAACTTGCAAACTGCTCAAAATTGACAAAGCTTGATATGGAGGGGAACAAGCTAACGGTGATTTCCAAAAATTTGATTGCATCATGGACTATGCTCACTGAACTTAATGCATCAAAGAATTTGCTTAATGGATTGCCTGAGAATATTGGTAGCCTATCACGCCTCATTCGTTTAAATATATTCCAAAACAAAATTTCATCAATTCCACCTTCAATAAAGGATTGCTGTGCGCTTGCAGAGTTATATATGGGGAATAATTCAGTGAGTACACTACCAGTGGAGATTGGGGCACTTTCTCATTTAGGGACTTTAGATCTTCACTCAAACCAGTTGAAAGAGTATCCAGTTGAGGCATGCAGGTTGCATCTCTTGGTCCTAGATCTTTCAAACAATTCATTGAGTGGACTGCCCTCAGAAATGGGTAAGATGACTACTTTGAGAAAGCTCTTGCTCACAGGCAATCCCATACGTACTCTTCGAAGCTCACTAGTTTCTGGGCGAACACCTGCTTTACTGAAGTTTCTCCGAAGTAGACTTCCTGAAAATGAAGAGCCTGAAGCTAGTAGCACTCAAAGAGGGGATGTAATATCTATGGCAGCTAGAATGTCTATCACTTCAAAGGAGCTTTCTCTAGAAGGGCAAGGGCTGAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTGATCTGTCAAAGAATTCCCTCCAGGAGCTACCAGTTGAACTTTCCTCATGTACCACTCTACAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGTCGCTACCTAATCTCATGTGTTTAAAGCTGGACAATAATCCACTTAAACAGATTCCGTCAGATGGGTTTCAAGCAGTCTCCATGCTACAGGTTTTAGATCTTAGTGGCAATATAGCTTCCTTGCCAGAGCACCCAACATTTTCTGGCTTACCACTTCTGCAAGAGCTTTACCTAAGGAGAATGCGGTTACATGAAGTTCCATCATCTATATTGGGCTTAAGGCACTTGCGGATACTTGATTTGAGTCAAAATTCAATTCAATTAGTTCCAGAGGGATTGAAGAATCTTGCTGCCCTTACTGAGCTGGACCTATCAGACAATAACATTTCGATGCTCCCTCCACAGCTGAGCTTGCTTGAGCCCAGCCTACAGGTACTGAGACTGGATGGAAATCCACTAAGAAG 1631 42.67 MDRVLKAARASVYRSLDAVQADEKWWEAVELQKLILAHNNIQLLSEELRNLSSLTVLNVSHNKLFELPAAIGELPALKLLDVSFNSLMRIPEEIGSATSLVKFDCSSNHLKELPGGLGRCSDLSDLKASNNSISSLPDELANCSKLTKLDMEGNKLTVISKNLIASWTMLTELNASKNLLNGLPENIGSLSRLIRLNIFQNKISSIPPSIKDCCALAELYMGNNSVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACRLHLLVLDLSNNSLSGLPSEMGKMTTLRKLLLTGNPIRTLRSSLVSGRTPALLKFLRSRLPENEEPEASSTQRGDVISMAARMSITSKELSLEGQGLSAVPSEVWESSELMKLDLSKNSLQELPVELSSCTTLQTLILSRNKIKDWPGAILKSLPNLMCLKLDNNPLKQIPSDGFQAVSMLQVLDLSGNIASLPEHPTFSGLPLLQELYLRRMRLHEVPSSILGLRHLRILDLSQNSIQLVPEGLKNLAALTELDLSDNNISMLPPQLSLLEPSLQVLRLDGNPLR 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9108965 9124757 - CePI673135_10g006570.1 Cec10g0657 213572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0657 543 Pfam Leucine rich repeat 389 446 IPR001611 GO:0005515(InterPro)
Cec10g0657 543 Pfam Leucine rich repeat 99 156 IPR001611 GO:0005515(InterPro)
Cec10g0657 543 Pfam Leucine rich repeat 461 518 IPR001611 GO:0005515(InterPro)
Cec10g0657 543 Pfam Leucine rich repeat 238 294 IPR001611 GO:0005515(InterPro)
Cec10g0657 543 Pfam Leucine rich repeat 30 87 IPR001611 GO:0005515(InterPro)
Cec10g0657 543 Gene3D Ribonuclease Inhibitor 328 449 IPR032675 -
Cec10g0657 543 Gene3D Ribonuclease Inhibitor 450 543 IPR032675 -
Cec10g0657 543 SUPERFAMILY L domain-like 345 542 - -
Cec10g0657 543 Gene3D Ribonuclease Inhibitor 14 161 IPR032675 -
Cec10g0657 543 PANTHER - 345 542 IPR050216 -
Cec10g0657 543 PRINTS Leucine-rich repeat signature 482 495 - -
Cec10g0657 543 PRINTS Leucine-rich repeat signature 261 274 - -
Cec10g0657 543 SUPERFAMILY L domain-like 29 303 - -
Cec10g0657 543 ProSiteProfiles Leucine-rich repeat profile. 260 281 IPR001611 GO:0005515(InterPro)
Cec10g0657 543 SMART LRR_typ_2 190 213 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 98 120 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 51 72 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 236 259 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 459 481 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 505 528 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 411 434 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 365 387 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 29 50 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 388 410 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 260 280 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 482 504 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 74 97 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 435 458 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 143 166 IPR003591 -
Cec10g0657 543 SMART LRR_typ_2 281 304 IPR003591 -
Cec10g0657 543 ProSiteProfiles Leucine-rich repeat profile. 507 528 IPR001611 GO:0005515(InterPro)
Cec10g0657 543 SMART LRR_bac_2 120 139 - -
Cec10g0657 543 SMART LRR_bac_2 74 93 - -
Cec10g0657 543 SMART LRR_bac_2 364 383 - -
Cec10g0657 543 SMART LRR_bac_2 143 162 - -
Cec10g0657 543 SMART LRR_bac_2 51 70 - -
Cec10g0657 543 SMART LRR_bac_2 505 524 - -
Cec10g0657 543 SMART LRR_bac_2 258 277 - -
Cec10g0657 543 SMART LRR_bac_2 170 186 - -
Cec10g0657 543 Gene3D Ribonuclease Inhibitor 162 327 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0657 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33