Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0663 ATGTTCTTTAGAGGTGAGTTCTTCGTCCATGGGGATAATGCTTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGTTATGACAATACATTCCATGCGGGATTTGGAGTAAACACGGCGGCGGTGAGCGGCGTACTTTTCAGAGGCGGAGAGGCGTGCGGCGCTTGTTTTCTAGTAATTTGCAACTACAAAGTCGACCCTAAGTGGTGTCTCCGCCGACGCGCTGTCACCGTCACCGCCACAAATTTTTGCCCGTCCAATAACAACGGCGGCTGGTGCGATCCCCCTCGGTCCCATTTCGACATGTCGTCACCTGCTTTTCTTACCATTGCTCGTCAAGGCAACGAAGGCATTGTCCCAGTCCTTTACAAGAGGGTGAGTTGTAGAAGAAAAGGAGGGGTTAGATTCACATTGAGAGGGCAATCAAACTTCAACATGGTGATGATATCGAACGTTGGAGGCAGTGGGGATGTGAAGGCTGCATGGGTAAGAGGGTCGAGGACGAGGACGTGGATGCCCATGCACCGAAACTGGGGGGCAAATTGGCAAGCCAGCATCGACCTCCGAAACCAAAGAATGTCGTTTAAGCTCACTCTAGTTGATGGAACAACATTAGAGTTTTTCAATGTTGTTCCTTCCTCTTGGAGGTTTGGACAGACATTTTCGTCCATGATTCAATTCTCCTAG 720 49.44 MFFRGEFFVHGDNAWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGVNTAAVSGVLFRGGEACGACFLVICNYKVDPKWCLRRRAVTVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVRGSRTRTWMPMHRNWGANWQASIDLRNQRMSFKLTLVDGTTLEFFNVVPSSWRFGQTFSSMIQFS 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9253246 9256547 - CePI673135_10g006630.1 Cec10g0663 213578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0663 239 Gene3D - 6 140 IPR036908 -
Cec10g0663 239 Gene3D - 144 239 IPR036749 -
Cec10g0663 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 154 234 IPR007117 -
Cec10g0663 239 SMART dpbb_1 50 134 IPR007112 -
Cec10g0663 239 SUPERFAMILY Barwin-like endoglucanases 13 162 IPR036908 -
Cec10g0663 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 33 144 IPR007112 -
Cec10g0663 239 PANTHER EXPANSIN-A15 14 233 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 Pfam Expansin C-terminal domain 145 223 IPR007117 -
Cec10g0663 239 PRINTS Expansin signature 220 236 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 PRINTS Expansin signature 45 59 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 PRINTS Expansin signature 101 118 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 PRINTS Expansin signature 74 85 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 PRINTS Expansin signature 191 212 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 PRINTS Expansin signature 87 97 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 PRINTS Expansin signature 143 155 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 PRINTS Expansin signature 155 176 IPR002963 GO:0009664(InterPro)
Cec10g0663 239 Pfam Lytic transglycolase 50 134 IPR009009 -
Cec10g0663 239 SUPERFAMILY PHL pollen allergen 141 234 IPR036749 -
Cec10g0663 239 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cec10g0663 239 PRINTS Expansin/Lol pI family signature 182 196 IPR007118 GO:0005576(InterPro)
Cec10g0663 239 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
Cec10g0663 239 PRINTS Expansin/Lol pI family signature 32 50 IPR007118 GO:0005576(InterPro)
Cec10g0663 239 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576(InterPro)
Cec10g0663 239 PRINTS Expansin/Lol pI family signature 14 29 IPR007118 GO:0005576(InterPro)
Cec10g0663 239 CDD DPBB_EXPA_N 15 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0341 Cec-Chr7:3296277 Cec10g0663 Cec-Chr10:9253246 2.20E-27 dispersed
Cec10g0663 Cec-Chr10:9253246 Cec11g0996 Cec-Chr11:16789062 7.40E-67 dispersed
Cec10g0663 Cec-Chr10:9253246 Cec07g0569 Cec-Chr7:7096549 2.60E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0663 - - - 0.0