Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0725 ACTTTGAGCAATAAACCCAATCAGTCGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAAAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACATGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGATGAAGTTTCCTCGTGTTGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGATCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGTTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTACTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACGGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGCAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACACGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGTGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAACGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTCGGGGACAAATGAGCCTTGTCGTCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAACAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCCTAGAAGTCGATACTGATGACAATGATCCTACCCTTACCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 2652 42.31 TLSNKPNQSCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLKKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQQARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDNEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERSGTNEPCRHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQNRLKRTTTTNDKKVDCSSSTPLEVDTDDNDPTLTSFLNKLKRKKHQPSSGGELN 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10516886 10529982 + CePI673135_10g007250.1 Cec10g0725 213640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0725 883 Gene3D - 257 308 - -
Cec10g0725 883 ProSiteProfiles Myb-like domain profile. 413 463 IPR001005 -
Cec10g0725 883 MobiDBLite consensus disorder prediction 748 812 - -
Cec10g0725 883 ProSiteProfiles Myb-like domain profile. 255 307 IPR001005 -
Cec10g0725 883 SUPERFAMILY Homeodomain-like 363 459 IPR009057 -
Cec10g0725 883 Gene3D - 363 417 - -
Cec10g0725 883 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 308 363 IPR017930 -
Cec10g0725 883 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 413 467 IPR017930 -
Cec10g0725 883 SUPERFAMILY Homeodomain-like 292 362 IPR009057 -
Cec10g0725 883 Pfam Myb-like DNA-binding domain 418 462 IPR001005 -
Cec10g0725 883 Pfam Myb-like DNA-binding domain 260 305 IPR001005 -
Cec10g0725 883 Pfam Myb-like DNA-binding domain 366 412 IPR001005 -
Cec10g0725 883 Pfam Myb-like DNA-binding domain 313 357 IPR001005 -
Cec10g0725 883 CDD SANT 369 410 IPR001005 -
Cec10g0725 883 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 365 412 IPR017930 -
Cec10g0725 883 MobiDBLite consensus disorder prediction 551 573 - -
Cec10g0725 883 Gene3D - 420 466 - -
Cec10g0725 883 MobiDBLite consensus disorder prediction 837 861 - -
Cec10g0725 883 SMART sant 312 361 IPR001005 -
Cec10g0725 883 SMART sant 159 256 IPR001005 -
Cec10g0725 883 SMART sant 365 414 IPR001005 -
Cec10g0725 883 SMART sant 417 465 IPR001005 -
Cec10g0725 883 SMART sant 259 309 IPR001005 -
Cec10g0725 883 Gene3D - 312 362 - -
Cec10g0725 883 ProSiteProfiles SANT domain profile. 311 360 IPR017884 -
Cec10g0725 883 CDD SANT 420 463 IPR001005 -
Cec10g0725 883 MobiDBLite consensus disorder prediction 527 550 - -
Cec10g0725 883 ProSiteProfiles Myb-like domain profile. 361 412 IPR001005 -
Cec10g0725 883 ProSiteProfiles Myb-like domain profile. 308 359 IPR001005 -
Cec10g0725 883 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 28 837 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cec10g0725 883 MobiDBLite consensus disorder prediction 491 585 - -
Cec10g0725 883 MobiDBLite consensus disorder prediction 841 861 - -
Cec10g0725 883 SUPERFAMILY Homeodomain-like 252 308 IPR009057 -
Cec10g0725 883 CDD SANT 315 359 IPR001005 -
Cec10g0725 883 MobiDBLite consensus disorder prediction 773 790 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0725 K09422 - - csv:101216287 1472.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1057 Cec-Chr6:17423665 Cec10g0725 Cec-Chr10:10516886 1.30E-10 dispersed
Cec10g0725 Cec-Chr10:10516886 Cec10g0505 Cec-Chr10:6090664 4.00E-09 dispersed
Cec10g0725 Cec-Chr10:10516886 Cec06g1902 Cec-Chr6:32389217 2.60E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1057 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.3 1.8e-296 1015.4
Cec06g1056 . 151 367 MYB-Related Transcription Factor Family AT1G09770 53.2 1.7e-49 194.9
Cec10g0725 . 43 495 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cec10g0725 . 43 495 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cec06g1057 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.3 1.8e-296 1015.4
Cec06g1056 . 151 367 MYB-Related Transcription Factor Family AT1G09770 53.2 1.7e-49 194.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30354 PF13921 Myb_DNA-bind_6 2.10E-11 CL0123 Cec TF