Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0751 CCTTCACCATTTGTTTTCTTACTCCACCACCTTCCTCATCGTCAATCATCGATTACCCAATTTCAGATCAATATCAGTTTTCAGCTGTCATTGTGCTGCATAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATTTGGGACCTTGGAGAAACTATTTGCATGAAGGAAATCTTAAGTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCTAGTCCATCGTCTCTTTTATTTCAGAAGAACACTTGGAGCACTCATTTATTTAGCATGAAATACCCACCTAATTACATTGTGCCTTCTAGATGCAATGTACTCAGGTGCCAGTCGTCATTGATGACAAACCAACCACTGGATCCACCTGGGATGAAGGCTGCTATAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCCGGTGGTTAATTTGGTTCCTGCAGCTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAAAAGTCGGACATATAACATCATGACCTTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCATTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCCGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTTACATACCAAACCATAAGTTCACCGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCGTGTTTTGTTAAGACTTCACATTTTGAAGAATATCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCATGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCGTCGGGTGACAGCAAGGCTGCCAAAGAGACAATACCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGATGCTGATACAAAAATGCATCGCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAGACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGTTGATAATTCAATGGAAGATTCCAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGATAACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACACTTCCTATTGAGGACAAAGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATAG 2343 42.55 PSPFVFLLHHLPHRQSSITQFQINISFQLSLCCIGVSLFKFHLPSIYLVLAMVLVGSLQLSYHLGPWRNYLHEGNLKFTSQSYNIRLLNVASPSSLLFQKNTWSTHLFSMKYPPNYIVPSRCNVLRCQSSLMTNQPLDPPGMKAAIVALTRFCNVLGACPPPVVNLVPAACIIMFAVWGLGPFLRYTRSLFHNDNNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVYIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHHGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETIPSDRKTEVKTGGDADTKMHRKVSMSTSEDKSSNELKHRPSSRSAASTSTSDMPDAKTTKLDVDNSMEDSSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSITKPGVEENIILGVALDGSKRTLPIEDKVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSE 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11212015 11219975 - CePI673135_10g007510.1 Cec10g0751 213666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0751 780 MobiDBLite consensus disorder prediction 653 672 - -
Cec10g0751 780 MobiDBLite consensus disorder prediction 581 621 - -
Cec10g0751 780 MobiDBLite consensus disorder prediction 548 711 - -
Cec10g0751 780 Gene3D - 243 347 - -
Cec10g0751 780 Gene3D - 349 404 IPR023408 -
Cec10g0751 780 MobiDBLite consensus disorder prediction 688 711 - -
Cec10g0751 780 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 52 757 IPR045042 -
Cec10g0751 780 MobiDBLite consensus disorder prediction 622 639 - -
Cec10g0751 780 MobiDBLite consensus disorder prediction 753 780 - -
Cec10g0751 780 Pfam Mechanosensitive ion channel, beta-domain 333 403 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g0751 780 SUPERFAMILY Sm-like ribonucleoproteins 333 403 IPR010920 -
Cec10g0751 780 MobiDBLite consensus disorder prediction 741 780 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0751 K22047 - - csv:101217250 1265.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1199 Cec-Chr8:23895984 Cec10g0751 Cec-Chr10:11212015 1.40E-187 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0166 . 263 654 Mechanosensitive Ion Channel Family AT4G00290 67.3 5.7e-154 541.2
Cec08g1199 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.4 4.8e-196 681.4
Cec10g0751 . 106 779 Mechanosensitive Ion Channel Family AT5G10490 55.3 1.1e-189 660.2
Cec08g1199 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.0e-197 686.0
Cec10g0751 . 94 556 Mechanosensitive Ion Channel Family AT1G58200 65.2 8.3e-172 600.9
Cec02g1160 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.1 2.8e-260 895.2
Cec02g0406 . 90 939 Mechanosensitive Ion Channel Family AT1G53470 51.3 2.8e-236 815.5
Cec02g1160 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.9 4.4e-247 851.3
Cec02g1160 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 5.2e-280 960.7
Cec02g0406 . 59 937 Mechanosensitive Ion Channel Family AT1G78610 56.2 1.1e-266 916.4
Cec02g1160 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.4e-237 817.8
Cec02g0406 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.4 7.0e-221 764.2
Cec05g1740 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 52.9 3.3e-182 635.6
Cec05g1740 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.2e-202 702.6
Cec03g1583 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.6 8.6e-199 690.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71