Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0760 ATGGCTCCTGCCACTAACTGGCTCTCCTTCTCTCTTTCCCCCATTGAAATGCTTCGCTCCACTGATTCTCCCTTTCTTCCTTATGATTCTTCCTCCACCCCCTCCCCTCACTATCTCCTCGACAATTTCTACTCTCATAATGGATGGAGTAACAATAATACATCTCACCCAAAATCATCTCAACTTTTCTTCATGGATGGAGATGAAAATAACGATGCTGTGAAAGAAGACCAAACAACGACACCCACCATTTTTAGTACCTTCCTTCATCCACAAACCCATCACCACCACCAACCCAAGCTTGAAGATTTCCTGGGCGATTCCTCTCCCATGGTGCGATATTCCGACAGCCAAACCGACACTCAAGATTCCTCTTTAACTCATATTTACGACCATGCTTCCGCCCCCCCTTACTTCGCCGACCAACAAGATCTCAAAACCATTGCTGCTTTTCAAGCTTTTTCAGCCAACTCTGGCTCTGAAGTTGATGATTCTGCTTCTATTGCTAGAACCCATATCCCCTCTGCTCATTCTATTGAATCTTCTCTCACTAATAATGAGTTGCCCTCTTTCTCTAACTGCCCTACCGGTGCTCTCTCACTCGCTGTCGCTCACTCCTCCGACACCGCCACTGCTGGGCCTATTGTGGCTGTAGATTCTGAGTCCTCTAAGAAAATTGCTGATACTTTTGGCCAGAGAACTTCCATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACAGCAACCACCAATTTTCCTGTTTCAAATTATGCCAAGGAATTGGAAGAAATGAAACATGTCACCAAACAAGAGTTTATCGCTTCCTTGCGAAGAAAGAGCAGCGGTTTTTCGCGAGGTGCCTCTATTTATAGAGGTGTAACAAGGCATCATCAGCAGGGTCGATGGCAGGCAAGAATTGGTCGTGTTGCTGGCAACAAGGACTTGTATCTCGGGACGTTTGCTACTGAAGAGGAAGCAGCCGAGGCTTACGATATAGCAGCAATCAAGTTTAGAGGTTTGAATGCTGTGACAAACTTTGAGATGAGTCGATATGATGTGGAAGCTATTGCAAAGAGTGCGCTGCCTATCGGGGGAGCAGCAAAGAGGCTAAAGCTTTGTCTGGAATCCGAACAGAAGCCGATTCCAAATCACGATCAAGCAACCCAATGCAGCAGTGGAAGCAACAATATCAACTTTGGCACCACTGTGCAAGCTGTGCCACCAATCCCTTGTGGTATTCCATACGACACTGCAGCTGTGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGCCATCGGTTCGTCGGAGTCGACCAGCCCAGGCATTGCAGGACTGGGGACTGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCGCCAATCGTATTAA 1539 47.3 MAPATNWLSFSLSPIEMLRSTDSPFLPYDSSSTPSPHYLLDNFYSHNGWSNNNTSHPKSSQLFFMDGDENNDAVKEDQTTTPTIFSTFLHPQTHHHHQPKLEDFLGDSSPMVRYSDSQTDTQDSSLTHIYDHASAPPYFADQQDLKTIAAFQAFSANSGSEVDDSASIARTHIPSAHSIESSLTNNELPSFSNCPTGALSLAVAHSSDTATAGPIVAVDSESSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESEQKPIPNHDQATQCSSGSNNINFGTTVQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPGIAGLGTVAPQAAEFFVWPRQSY 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11464649 11468415 - CePI673135_10g007600.1 Cec10g0760 213675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0760 512 ProSiteProfiles AP2/ERF domain profile. 236 299 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 CDD AP2 235 301 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 SUPERFAMILY DNA-binding domain 334 395 IPR016177 GO:0003677(InterPro)
Cec10g0760 512 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 142 429 - -
Cec10g0760 512 Pfam AP2 domain 336 385 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 SUPERFAMILY DNA-binding domain 235 301 IPR016177 GO:0003677(InterPro)
Cec10g0760 512 CDD AP2 334 395 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 SMART rav1_2 335 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 SMART rav1_2 236 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 PRINTS Ethylene responsive element binding protein signature 375 395 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 FunFam AP2-like ethylene-responsive transcription factor 334 395 - -
Cec10g0760 512 ProSiteProfiles AP2/ERF domain profile. 335 393 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 FunFam AP2-like ethylene-responsive transcription factor ANT 235 301 - -
Cec10g0760 512 Gene3D AP2/ERF domain 335 395 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g0760 512 Gene3D AP2/ERF domain 236 301 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1733 Cec-Chr8:28445373 Cec10g0760 Cec-Chr10:11464649 2.60E-85 dispersed
Cec10g0760 Cec-Chr10:11464649 Cec11g0922 Cec-Chr11:14235145 4.90E-100 dispersed
Cec10g0760 Cec-Chr10:11464649 Cec04g1474 Cec-Chr4:34282342 4.00E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30357 PF00847 AP2 1.90E-09 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0760 K09285 - csv:101217714 879.396