Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0821 ATGAAGCCATGGGGTAATTTGGGCCTTTGGTTCACAGCCATGGCTGCTGTTTTCCTCTTCTTCTTCTGTCTCGACTACAATGGCTACCGGATTTCAACGTTCCCAGTAAGGAGATACCTAAGGGACATGGACATCAACAATTCTTCGACACTATTCAACGTCACACTACAAAGAAAAGGTGGATATGTTATAATGGACAATAGCATTGTTCTAGTTACTCTTTCAACTCCAGATGGCGACGTCGTTGGATTGAGCTACAATGGAATCGACAACATTCTCGAAACCAAAAACGAAGAGCAAAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAGACGAACCCATTACCACGGACAGATTAAAAGGAGAGAGTTTTGAAGTAATAGTAACGAACGAGGAACAACTGGAAATATCGTTTAAGAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCCGTAAATGTAGACAAAAGGTATGTATTGCTGAGAGGAAGCTCTGGGTTTTATAGTTATGCAATATTCGAGAGGCCCATTGGGTGGCCCCAGATTGAAATGGATCAAGTTAGGATTGTTTACAAGCTTCAAAGCAAAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGGGTGATGCCCACAATGAGAGACCGTGAAAATGGCGTGCCATTGGCTTATCCCGAGGCCGTTCTTTTGACTAATCCTACCAATGAAGAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAACGGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTATCTTTGTCTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGCAAGATGCCAAACAACAGTTGGCAATAGAAATCAATGAGTGGCCCTACACTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTCACTGGCCGGTTATTAGTCCGTGATGGGTACATCAGTAGCAAACTTATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAACGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTTAATCAATAACATCCGAGCTGGAGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAAGCAAATATTACAATTGAGCTCGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCTGCCGAGAGAAGGCCCAACCATCTGGGAGATTGGCATTCCCGATCGCACTGCAGCAGAGTTTTATGTGCCCGACCCTTATCCGACTCTCATGAATAAACTGTACAACAACCATGCTGACAAGTTCCGACAATATGGTTTGTGGGAACGTTATACGGCTATGTATCCAAATAATGATCTTGTGTTTACCGTCGGTGTTGACGATTATACAAAGGACTGGTTCTATGCTCATGTTACCAGGAATGTGGGGAATCAAACATACCAAGCGACCACTTGGGAGATCAGATTTTTATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTAGCATCTGCTGCTGAATGCGAATTACAGGTTCGATTAAACGATCGAGAATCAGAGCAGGCTGCTTTCTCGACAGGGAAGATCGGAAAGGACAATGCGATTGCAAGGCATGGCATACATGGACTTTACTGGTTATACTCCATACCTCTCCCTGGTGATCAATTTCTACAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCGAAGGTCTCATGTACGACTACATTCGACTTGAAGCTCCCCACCTCTAA 2040 46.47 MKPWGNLGLWFTAMAAVFLFFFCLDYNGYRISTFPVRRYLRDMDINNSSTLFNVTLQRKGGYVIMDNSIVLVTLSTPDGDVVGLSYNGIDNILETKNEEQNRGYWDAVWNNPDEPITTDRLKGESFEVIVTNEEQLEISFKKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPIGWPQIEMDQVRIVYKLQSKMFDYMAVSDDRQRVMPTMRDRENGVPLAYPEAVLLTNPTNEELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPIFVYLNSVSPEEDSLSLWQDAKQQLAIEINEWPYTFPQSEDFPSSAQRGSVTGRLLVRDGYISSKLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADNHGNFLINNIRAGVYNLYAFVPGFIGDYKYEANITIELGSEIRLDVMVFDLPREGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYTAMYPNNDLVFTVGVDDYTKDWFYAHVTRNVGNQTYQATTWEIRFLLQSVNQTANYTLQIALASAAECELQVRLNDRESEQAAFSTGKIGKDNAIARHGIHGLYWLYSIPLPGDQFLQGNNSIYLTQARSESPFEGLMYDYIRLEAPHL 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15293925 15306279 - CePI673135_10g008210.1 Cec10g0821 213736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0821 679 Gene3D - 374 476 - -
Cec10g0821 679 SUPERFAMILY Galactose-binding domain-like 484 675 IPR008979 -
Cec10g0821 679 Gene3D - 484 675 - -
Cec10g0821 679 SUPERFAMILY Galactose mutarotase-like 65 339 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cec10g0821 679 CDD RGL4_M 377 473 IPR029413 -
Cec10g0821 679 CDD RGL4_N 60 344 - -
Cec10g0821 679 Pfam Polysaccharide lyase family 4, domain II 400 472 IPR029413 -
Cec10g0821 679 Pfam Polysaccharide lyase family 4, domain III 486 674 IPR029411 -
Cec10g0821 679 Gene3D - 52 341 IPR014718 GO:0030246(InterPro)
Cec10g0821 679 FunFam Rhamnogalacturonate lyase B 374 473 - -
Cec10g0821 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 678 IPR051850 -
Cec10g0821 679 CDD RGL4_C 488 675 - -
Cec10g0821 679 Pfam Rhamnogalacturonate lyase family 53 246 IPR010325 -
Cec10g0821 679 SUPERFAMILY Starch-binding domain-like 375 476 IPR013784 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0821 Cec-Chr10:15293925 Cec11g1529 Cec-Chr11:29542643 7.90E-231 dispersed
Cec10g0821 Cec-Chr10:15293925 Cec04g1520 Cec-Chr4:34722312 1.30E-236 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0821 K18195 - csv:101215252 1260.36