Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0842 ATGGGTTTGGATGATTTTTGTCAAACAGGCTTGGTGTTGGGCTTAGGGCTCTCTAATGATCAAAGGTTGAAGAAGAAGCCTGCACCTTGCTCCTCTAGTTCCCTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCAGTGGAGGCGGCAGCGAAACTCACCAGAAAGTTATTGATGTCAACAACAAGATGATGATAATTAATAACAACAACTCTGATGTGGGTGTTCATCATTTGCATAGCCAAGAAGCTTCCACTCATAGCAGCAGCGCTGTTTGTTCTTCCTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGAGAGATCTTAGCAGCGAAGAAGTTGAATTGGACAGACTTTCTTCTAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAAGCCGCTCTCTTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAAGCAAAAACAAGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTATTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGGCTACAAAAGGAGCTTCAAGAATTGAAGGCGTTAAAGCTGGCTCAACCACTATACATGCAGATGCCGGCGGCGACATTAACTATATGCCCCTCCTGCGAAAGGCTCGGCGGCGGCGGCGCTTCCAAACCCAAATTTTCAATGGCTCCTAAGCCTCACTTTTACAACCCCTTCTCCAATCCTTCCGCCGCATGTTAG 834 44.96 MGLDDFCQTGLVLGLGLSNDQRLKKKPAPCSSSSLDFEPCALTLGFSGSGGGSETHQKVIDVNNKMMIINNNNSDVGVHHLHSQEASTHSSSAVCSSFSGGGRVKRERDLSSEEVELDRLSSRVSDEDEDGSNARKKLRLSKQQAALLEQSFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKALKLAQPLYMQMPAATLTICPSCERLGGGGASKPKFSMAPKPHFYNPFSNPSAAC 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16896854 16897920 - CePI673135_10g008420.1 Cec10g0842 213757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0842 277 MobiDBLite consensus disorder prediction 102 137 - -
Cec10g0842 277 SUPERFAMILY Homeodomain-like 122 192 IPR009057 -
Cec10g0842 277 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec10g0842 277 FunFam Homeobox-leucine zipper protein 18 121 196 - -
Cec10g0842 277 SMART halz 191 234 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0842 277 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g0842 277 CDD homeodomain 135 192 IPR001356 GO:0003677(InterPro)
Cec10g0842 277 Coils Coil 197 227 - -
Cec10g0842 277 MobiDBLite consensus disorder prediction 81 137 - -
Cec10g0842 277 Gene3D - 139 189 - -
Cec10g0842 277 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cec10g0842 277 SMART HOX_1 133 195 IPR001356 GO:0003677(InterPro)
Cec10g0842 277 MobiDBLite consensus disorder prediction 81 98 - -
Cec10g0842 277 Pfam Homeodomain 135 189 IPR001356 GO:0003677(InterPro)
Cec10g0842 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 269 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1485 Cec-Chr4:34408287 Cec10g0842 Cec-Chr10:16896854 6.00E-78 dispersed
Cec05g1944 Cec-Chr5:31498779 Cec10g0842 Cec-Chr10:16896854 3.70E-51 dispersed
Cec06g1591 Cec-Chr6:29489667 Cec10g0842 Cec-Chr10:16896854 8.90E-40 dispersed
Cec07g0721 Cec-Chr7:13812448 Cec10g0842 Cec-Chr10:16896854 6.80E-34 dispersed
Cec10g0842 Cec-Chr10:16896854 Cec10g1777 Cec-Chr10:32503119 2.50E-50 dispersed
Cec10g0842 Cec-Chr10:16896854 Cec09g0378 Cec-Chr9:3241315 3.00E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30361 PF00046 Homeodomain 5.20E-16 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0842 K09338 - csv:101205848 371.703