Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0867 ATGGAGTTGGAGGATCACGAAGAAGAAGACATGGAAATAGTAGAACCACCATCAAATTACATCAACAAAATCCACCCACTTTCTTGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCATATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCTTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGGTGGAGATGGCGGCGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTTGTAGTAAGGAATCCAAACAAAACTAA 591 52.96 MELEDHEEEDMEIVEPPSNYINKIHPLSWHTKNPSPVHSNPIIYNYKECLKNHAVAVGGHAFDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAAKMEWRIQKKDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFCSKESKQN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18775665 18776255 + CePI673135_10g008670.1 Cec10g0867 213782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0867 196 SUPERFAMILY Homeodomain-like 123 187 IPR009057 -
Cec10g0867 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec10g0867 196 FunFam Zinc-finger homeodomain protein 2 119 190 - -
Cec10g0867 196 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Cec10g0867 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cec10g0867 196 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Cec10g0867 196 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Cec10g0867 196 Gene3D - 121 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0867 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1547 Cec-Chr8:27126900 Cec10g0867 Cec-Chr10:18775665 1.20E-37 dispersed
Cec10g0867 Cec-Chr10:18775665 Cec11g0010 Cec-Chr11:170889 8.60E-37 dispersed
Cec10g0867 Cec-Chr10:18775665 Cec04g1544 Cec-Chr4:34928549 1.70E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1176 . 52 246 ZF-HD Transcription Factor Family AT5G65410 51.0 8.5e-46 181.0
Cec08g1176 . 22 242 ZF-HD Transcription Factor Family AT4G24660 50.9 1.6e-50 196.4
Cec04g1544 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.8e-47 185.7
Cec10g0867 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.3 1.2e-40 163.7
Cec11g0010 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.5e-51 200.3
Cec11g0010 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 5.0e-55 211.8
Cec04g1655 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Cec10g1514 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cec09g1936 . 6 254 ZF-HD Transcription Factor Family AT5G15210 53.0 1.4e-50 196.8
Cec10g1514 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cec09g1936 . 16 258 ZF-HD Transcription Factor Family AT3G28920 58.8 4.8e-58 221.9
Cec09g1936 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 8.0e-51 198.0
Cec10g1514 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cec09g1936 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 7.8e-48 187.6
Cec11g0010 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.5e-51 200.3
Cec08g1176 . 22 242 ZF-HD Transcription Factor Family AT4G24660 50.9 1.6e-50 196.4
Cec04g1544 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.8e-47 185.7
Cec10g0867 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.3 1.2e-40 163.7
Cec09g1936 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 8.0e-51 198.0
Cec10g1514 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cec04g1655 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Cec08g1176 . 52 246 ZF-HD Transcription Factor Family AT5G65410 51.0 8.5e-46 181.0
Cec09g1936 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 7.8e-48 187.6
Cec10g1514 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cec09g1936 . 6 254 ZF-HD Transcription Factor Family AT5G15210 53.0 1.4e-50 196.8
Cec11g0010 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 5.0e-55 211.8
Cec10g1514 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cec09g1936 . 16 258 ZF-HD Transcription Factor Family AT3G28920 58.8 4.8e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30363 PF04770 ZF-HD_dimer 1.20E-27 No_clan Cec TF