Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0900 TCAAGTGACAGATCTGACTATAATAAAATCCGCGAATTGCTAGTGGTTGACAATAGTGAGTGGGATCAGTTGATAAAGCCTAGATGGGATGAGAGTGTTTCCCTTGAAAGCGCAAAAGAATTGCTGCTTCAAAGGCTACTTAAAGAGAAGCTACACGTATGGCTATTGCAAAAAGTCAGGGAAGGTGGGAGAGGCCCTAGCGTATTGGATGAGCAAGGTCAAGGCGTGATACATTTTGCTGCTGCACTTAACTATTATTGGGCCCTTCTACCAGCATTAGTTGCTGGTATAAATGTCAATTTTCGTGATGCAAATGGATGGACAGCACTACATTGGGCTGCATTCTTTGGCAGAGAGCGTACAGTCGCTGCCCTCATCTCTCTGGGTGCAGCTCCTGGAGCACTGGCAGATCCAAGCGTCAAGTATCCATCTGGCAGAACTCCTGCTGATTTAGCATCCTCAAATGGGCACAAAGGAATTGCTGGTTATCTTGCAGAGTCGGTGCTAAGCGCACACTTGGAATCTCTGAATTTTGATAATCAAGAAAGTAAGGCTGCAGATACTTGTGGAGAAAAAGCAGTACAAACAGCTGCTGAGCGTGTCCCCACTCCGCACGAGGGCAATGATATGTATACATTGTCCCTCAAGGATTCATTAGCAGCCATATCTAATGCTACCCAAGCTGCTGCTCGTATTCACGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGGAGGTGAACGATAAATTCGACGTTTCAAATGATCAGGCTTTTTCACTTTTACCAGTTAAGAGACGTAATCCGGGATCACATGATGATGAGCATGCTGCCGCCATTCGCATACAAAACAAGTTCCGCAGTTGGAAGGGCAGAAAAGATTTTCTAATAGGCCGACAGAGAATTGTTAAAATTCAG 921 45.17 SSDRSDYNKIRELLVVDNSEWDQLIKPRWDESVSLESAKELLLQRLLKEKLHVWLLQKVREGGRGPSVLDEQGQGVIHFAAALNYYWALLPALVAGINVNFRDANGWTALHWAAFFGRERTVAALISLGAAPGALADPSVKYPSGRTPADLASSNGHKGIAGYLAESVLSAHLESLNFDNQESKAADTCGEKAVQTAAERVPTPHEGNDMYTLSLKDSLAAISNATQAAARIHEVMRVQSFQRKQLEVNDKFDVSNDQAFSLLPVKRRNPGSHDDEHAAAIRIQNKFRSWKGRKDFLIGRQRIVKIQ 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19901642 19903317 - CePI673135_10g009000.1 Cec10g0900 213815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0900 307 Gene3D - 274 307 - -
Cec10g0900 307 Pfam Ankyrin repeats (3 copies) 77 167 IPR002110 GO:0005515(InterPro)
Cec10g0900 307 SUPERFAMILY Ankyrin repeat 57 166 IPR036770 -
Cec10g0900 307 SMART ANK_2a 144 173 IPR002110 GO:0005515(InterPro)
Cec10g0900 307 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Cec10g0900 307 Gene3D - 25 168 IPR036770 -
Cec10g0900 307 ProSiteProfiles Ankyrin repeat region circular profile. 105 130 - -
Cec10g0900 307 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 307 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cec10g0900 307 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Cec10g0900 307 ProSiteProfiles IQ motif profile. 276 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0900 K21596 - - cit:102621892 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0470 Cec-Chr6:5282011 Cec10g0900 Cec-Chr10:19901642 4.40E-43 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0900 . 9 305 CAMTA Transcription Factor Family AT2G22300 54.3 1.8e-79 294.7
Cec10g0901 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.0 4.6e-52 203.8
Cec06g0221 . 6 952 CAMTA Transcription Factor Family AT1G67310 51.6 1.0e-250 863.6
Cec06g0470 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.2 3.7e-259 891.3
Cec06g0470 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.9 6.8e-193 671.4
Cec10g0901 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.0 4.6e-52 203.8
Cec10g0900 . 9 305 CAMTA Transcription Factor Family AT2G22300 54.3 1.8e-79 294.7
Cec06g0221 . 6 952 CAMTA Transcription Factor Family AT1G67310 51.6 1.0e-250 863.6
Cec06g0470 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.9 6.8e-193 671.4
Cec06g0470 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.2 3.7e-259 891.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38