Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0901 ATGAAACGATTTGCTAACAAGCAATCAACCTTATTTGATCATCAGAATCAGATCAATGGCATTGAAAATCAGTTGCTGTTAAGATGTGGAGAGATTAAGCGTTGGGAATCCGATCAATGCACCAACTATTCTCAATTTTCCTTCAAGCCAGTCGTCGGTAATTGCTTTGACTTTATTCTACTCAAATTCAGCTCGTCTTCAATCGAGCACCAGAACATGGCAGAAATAGATATTGAACGAATCCTTTTAGAAGCAAAACATCGATGGCTACGCCCGGCTGAAATATGTGAAATTCTCAAAAACTACGATAAATTTTCTATTGCTTCAGAGCCTGCTAATATGCCTCCAAGTGGTTCACTTTTTCTTTATGATCGAAAGGTGGTAAGATACTTCCGCAAGGATGGACATAATTGGAGGAAGAAGAAAGGAAAGGCGGTAAAGGAAGCTCGCGAGAGGCTCAAGGCTGGAAGTGTGTATGTGCTGAATTGCTACCATGCACATGGGGAAGAAAATGAAAATTTTCAGAGGCGCACTTATTGGATGCTGGAAGAGGATCTATCAAACATTGTTCTTGTCCACTATCGGGAAGTGCAGAGCAGTAGAGGAAATTTCAATCGTAATAGGGGGACTGATGAAGCTGCTCTATTCTCTCGAGAATTTGAAGATACTAAGAACCATCCAGAAATGGCCTCTAGTTTTCATCCATCTAATTATAAAATGCTTTCACAAACTGCTGAAATTAGCCTGAACAGTGCCCAGGTATCAGAATATGAAGATGCTGAATCAGAATACAGTAACCGAGAAAGTACTGTTTTCCATTCTTTTCTTGGATTACAACAGTTGAAAATGGAGAGTAATAGTGCTGATCTCTGTGATTCGAAGTATCCTATATCATTATCAGATATTTATCAAGAAGACTTTACAGCCTTTGGTGGGAATGGCTTTCCGACTACATCGGATAGAAGTAAATATAGCAATAGTGTTGGATTCATTTACGAGCCCCACAGAACACTTTGTTTCTCTTCTGAAAACGTCTTGGAAAGTGGTACTACTGGAATATATTCATCCTATCTGCAGCCATCATTTTTTACATCTCAACCTCAAATTTTAGACGATGTTCCAAAACAAGGTGATGAAATAGTGGGACTGCTCTCCTCTGATAAATGTAAAAGGACAGTGTTTAATAATCATCTACATTCCCAGGAAGATTGTCAGGAATTACTTGTGAAATCATCTGGCCAACGAGCCTCTGATCTACCCAGGAAGAATCTTGGAAAGGAAATAGTGGTCCCTACTGTCATGCCGGCTCCGGTCCAATCTTCTGAACCAATACAGGAAATAACCAGGCTGCTGAGAGTGATGTAG 1365 40.0 MKRFANKQSTLFDHQNQINGIENQLLLRCGEIKRWESDQCTNYSQFSFKPVVGNCFDFILLKFSSSSIEHQNMAEIDIERILLEAKHRWLRPAEICEILKNYDKFSIASEPANMPPSGSLFLYDRKVVRYFRKDGHNWRKKKGKAVKEARERLKAGSVYVLNCYHAHGEENENFQRRTYWMLEEDLSNIVLVHYREVQSSRGNFNRNRGTDEAALFSREFEDTKNHPEMASSFHPSNYKMLSQTAEISLNSAQVSEYEDAESEYSNRESTVFHSFLGLQQLKMESNSADLCDSKYPISLSDIYQEDFTAFGGNGFPTTSDRSKYSNSVGFIYEPHRTLCFSSENVLESGTTGIYSSYLQPSFFTSQPQILDDVPKQGDEIVGLLSSDKCKRTVFNNHLHSQEDCQELLVKSSGQRASDLPRKNLGKEIVVPTVMPAPVQSSEPIQEITRLLRVM 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19906580 19916169 - CePI673135_10g009010.1 Cec10g0901 213816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0901 454 ProSiteProfiles CG-1 DNA-binding domain profile. 78 203 IPR005559 GO:0003677(InterPro)
Cec10g0901 454 Pfam CG-1 domain 84 196 IPR005559 GO:0003677(InterPro)
Cec10g0901 454 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 77 393 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cec10g0901 454 SMART CG_1_2 81 198 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0901 K21596 - - cit:102621892 350.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1671 Cec-Chr9:30867407 Cec10g0901 Cec-Chr10:19906580 1.20E-54 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0900 . 9 305 CAMTA Transcription Factor Family AT2G22300 54.3 1.8e-79 294.7
Cec10g0901 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.0 4.6e-52 203.8
Cec06g0221 . 6 952 CAMTA Transcription Factor Family AT1G67310 51.6 1.0e-250 863.6
Cec06g0470 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.2 3.7e-259 891.3
Cec06g0470 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.9 6.8e-193 671.4
Cec10g0901 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.0 4.6e-52 203.8
Cec10g0900 . 9 305 CAMTA Transcription Factor Family AT2G22300 54.3 1.8e-79 294.7
Cec06g0221 . 6 952 CAMTA Transcription Factor Family AT1G67310 51.6 1.0e-250 863.6
Cec06g0470 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.9 6.8e-193 671.4
Cec06g0470 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.2 3.7e-259 891.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38