Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0922 ATGGGTACAAGAACACAGCAACCATGCCGAGAAGACGATGAGGACGACCTCCCAAGTGGCCCTGGTGCTACCACAATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCAGGGTCCCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTATAATGAGGTTGCAGATGAACTTGTCGCAGAGTTCGCTGATCCTGGCAACAGTGTTGCATCGCCAGATCAGCAACAGTACGACGAAAAAAATATCAGGCGAAGGGTGTATGATGCCTTGAATGTCCTCATGGCAATGGATATTATTTCAAAGGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTTAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTTAGTTCTGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGACGACAATTACGTTTTGAAGGCGATGAAATTTTGTGACAGACCGCAATGTGATAATACGGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTACATTGTCTAACACACCAGTTAGAACTCCAACCTCGCCTCCTCTTCCTGGGATAATAAAAGCTCGCGTCAAGCACGAACATTAA 1044 47.61 MGTRTQQPCREDDEDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQPPQIPLPTLSNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20434833 20439049 - CePI673135_10g009220.1 Cec10g0922 213837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0922 347 MobiDBLite consensus disorder prediction 1 95 - -
Cec10g0922 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Cec10g0922 347 PANTHER TRANSCRIPTION FACTOR DP 24 307 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cec10g0922 347 MobiDBLite consensus disorder prediction 22 60 - -
Cec10g0922 347 FunFam Transcription factor-like protein DPB 87 180 - -
Cec10g0922 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec10g0922 347 FunFam Transcription factor-like protein DPB 181 306 - -
Cec10g0922 347 Gene3D - 88 180 IPR036388 -
Cec10g0922 347 Coils Coil 191 225 - -
Cec10g0922 347 Gene3D Transcription factor DP 181 303 IPR038168 -
Cec10g0922 347 SMART DP_2 182 345 IPR014889 -
Cec10g0922 347 SUPERFAMILY E2F-DP heterodimerization region 182 294 IPR037241 -
Cec10g0922 347 PIRSF Txn_factor_DP 4 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cec10g0922 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec10g0922 347 CDD DP_DD 180 283 IPR014889 -
Cec10g0922 347 Pfam Transcription factor DP 183 288 IPR014889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0922 K04683 - - csv:101216863 669.077
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g1501 . 34 391 E2F-DP Transcription Factor Family AT3G48160 56.4 2.4e-102 369.4
Cec10g0922 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cec02g2351 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-119 426.4
Cec04g1183 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.4 3.8e-118 422.2
Cec02g2351 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 1.1e-114 410.6
Cec04g1183 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.1 5.1e-96 348.6
Cec08g1486 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 8.8e-56 214.9
Cec02g2351 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cec08g1486 . 151 400 E2F-DP Transcription Factor Family AT1G47870 53.6 6.3e-63 238.4
Cec10g0922 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cec02g2351 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 1.1e-114 410.6
Cec04g1183 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.1 5.1e-96 348.6
Cec08g1486 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 8.8e-56 214.9
Cec02g2351 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-119 426.4
Cec04g1183 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.4 3.8e-118 422.2
Cec02g2351 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cec08g1486 . 151 400 E2F-DP Transcription Factor Family AT1G47870 53.6 6.3e-63 238.4
Cec01g1501 . 34 391 E2F-DP Transcription Factor Family AT3G48160 56.4 2.4e-102 369.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30364 PF08781 DP 4.00E-41 No_clan Cec TF