Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0925 ATGTCAGGGCTGGAGATGGAAAAAGCCTTGCCCGGGTGGCCTTATCCATTGTTTGTTGAGATGCAATTGACGAACTCAACACAGATCGCAGGAAATCAAGTTATTTCTCGCATAAGAGATATGAAGATCTTTATTTATTGCCGAGCCAATTCTAATTCTCTTTCTGGGATATCTAAGGGAACCTCTAAAACTGCACTAGAGAGAATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGGCAATTTTACCCAGCATTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAGAATATTTCTCGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGCCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACAGCTCTGTTGTTGATCAAAGCTCTGCATTGGCTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCCGTGCCGTTATTGTCTCATATCCGGATAGTTTCTTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAAGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACGACAGCTGTGTCAACATTTGTAAAATATATTTTCTATGTTAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAGCTTATCCGGGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATCACTTCAAATATGAATGATCGTTTTCCAGATGCAACGCCAGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCCTGGTTGGAGCGACAGCATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCGGAGCAGGCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACTACTAGTTCATCTGCACAAGGTACCAGTGGTACGGGTGCTGCTAATGATAATTTGAGTCATCATCAGGCTAGAGTCCGAGCTGCTGCAGCAGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTGAAAGACCTATGCCTGACTCCATCAATACAGAAACGAATGGAGAACAAGCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGCGGCCCTTCAAACCTATCCTTCACTCAATTTCCCCAACATCTCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGGAACAATACAGATGGATCGGGCAGTAGTCTAAATGTATCAGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTTCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAATTGAGGAAAACTCAAGAGCAAATGAAGCAGATAAGAAAGGGAAAAGCGTAACATCCTCTGCACCATCATCGTCTTCATCAGATTCTCATCGGCCTGGAGAAACCGAAAGTCCGAACTTGTTTGATGTCAGACGCAATCCTAAATCTGAAGGTCACATCGTCGTGAGGTTGAAATTCCTTCAAATACTCACTTGGCAACAACTTCACTGGTACAATCAACTCCGTTCTTTCTCACGTTGGAGGAAGTCCATTGCTATGGACATCCATAAGTTTCTAATGACCCTTGCTGCCTAG 2040 42.4 MSGLEMEKALPGWPYPLFVEMQLTNSTQIAGNQVISRIRDMKIFIYCRANSNSLSGISKGTSKTALERMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKRIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTKKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSGAGGHHGVQSDANQQGTGTTSSSAQGTSGTGAANDNLSHHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAVVPQVERPMPDSINTETNGEQAPNGHPQYFSFPGGPSNLSFTQFPQHLFVPFQPREGTGNNTDGSGSSLNVSGSQLEAQERFLQQQIEILQNQLQLLRKPKIEENSRANEADKKGKSVTSSAPSSSSSDSHRPGETESPNLFDVRRNPKSEGHIVVRLKFLQILTWQQLHWYNQLRSFSRWRKSIAMDIHKFLMTLAA 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20480200 20491552 + CePI673135_10g009250.1 Cec10g0925 213840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0925 679 SUPERFAMILY RING/U-box 340 405 - -
Cec10g0925 679 MobiDBLite consensus disorder prediction 414 443 - -
Cec10g0925 679 MobiDBLite consensus disorder prediction 596 616 - -
Cec10g0925 679 CDD RING-H2_synoviolin 357 398 - -
Cec10g0925 679 MobiDBLite consensus disorder prediction 582 627 - -
Cec10g0925 679 PANTHER RING ZINC FINGER PROTEIN 57 405 IPR050731 -
Cec10g0925 679 Pfam Ring finger domain 359 398 IPR001841 -
Cec10g0925 679 SMART ring_2 360 397 IPR001841 -
Cec10g0925 679 ProSiteProfiles Zinc finger RING-type profile. 360 398 IPR001841 -
Cec10g0925 679 Coils Coil 554 574 - -
Cec10g0925 679 MobiDBLite consensus disorder prediction 408 443 - -
Cec10g0925 679 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 332 407 - -
Cec10g0925 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 403 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1395 Cec-Chr9:19721728 Cec10g0925 Cec-Chr10:20480200 2.50E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0925 K10601 - csv:101215351 974.156