Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0926 ATGTCGGTGATGTTGGGTTCTTGCTCTTCTTCTCTGTGGATCATTTTCGTGTTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTACAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGTGATCTTAAGAATTTGCAATATCTGGAGCTTTACAGCAACAATATTAGTGGAGAAATTCCCTCGGAGCTTGGGCTTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATTCACACTTGGCGAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACAAGCTAACTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAACCTTCTTAATGAATCTGCTGCACATACTCCACCACCTCCACTACCTTCTTCACCAAGCCCTGTATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCCGTTGCGGTTGCTCTGTGGCGTCGGAAGAAGCCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACGGATCATTTTAGCAACAAACATATTCTAGGGAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGCCGAGAAGCACAACCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGAGGAACAATTGGGCATATAGCTCCTGAATACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGACGACGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACTTAAGCCGCAATCCCCACCCAAGTACGACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTATCCGGTCCAAGATGA 1842 45.11 MSVMLGSCSSSLWIIFVLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLKNLQYLELYSNNISGEIPSELGLLTNLVSLDLYLNNLTGPIPFTLGELEKLRFLRLNNNSLSGTIPMSLTNVKSLQVLDLSYNKLTGDIPVNGSFSLFTPISFAHNLLNESAAHTPPPPLPSSPSPVSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERREAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20516035 20524036 + CePI673135_10g009260.1 Cec10g0926 213841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0926 613 SUPERFAMILY L domain-like 28 203 - -
Cec10g0926 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g0926 613 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Cec10g0926 613 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Cec10g0926 613 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g0926 613 Pfam Leucine Rich Repeat 94 114 IPR001611 GO:0005515(InterPro)
Cec10g0926 613 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Cec10g0926 613 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cec10g0926 613 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cec10g0926 613 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515(InterPro)
Cec10g0926 613 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g0926 613 SMART serkin_6 290 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g0926 613 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Cec10g0926 613 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Cec10g0926 613 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Cec10g0926 613 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
Cec10g0926 613 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cec10g0926 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 613 - -
Cec10g0926 613 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cec10g0926 613 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Cec10g0926 613 MobiDBLite consensus disorder prediction 580 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0719 Cec-Chr2:7544554 Cec10g0926 Cec-Chr10:20516035 5.50E-31 dispersed
Cec06g0185 Cec-Chr6:1874868 Cec10g0926 Cec-Chr10:20516035 1.80E-30 dispersed
Cec07g1840 Cec-Chr7:34073170 Cec10g0926 Cec-Chr10:20516035 3.70E-125 dispersed
Cec08g0305 Cec-Chr8:6684058 Cec10g0926 Cec-Chr10:20516035 1.40E-227 dispersed
Cec08g1845 Cec-Chr8:29313149 Cec10g0926 Cec-Chr10:20516035 5.90E-140 dispersed
Cec09g1638 Cec-Chr9:29586358 Cec10g0926 Cec-Chr10:20516035 1.30E-209 dispersed
Cec10g0926 Cec-Chr10:20516035 Cec11g0254 Cec-Chr11:2691823 7.20E-74 dispersed
Cec10g0926 Cec-Chr10:20516035 Cec11g0528 Cec-Chr11:5619330 4.90E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72313 PF00069 Pkinase 2.30E-44 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0926 K13416 - csv:101216389 1129.39